PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286178.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 348aa MW: 39117.1 Da PI: 8.0508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	179	226	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_021286178.1 179 SHSLAERVRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 226 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MAAFSFQPHP FLLDSIFLPN TPTKISGFME EGNINSNCFS QVYPPEPIQE SPFDPKFHES 60 SCLDHSSKIV YSDNEPSVTK KQSTDDSTVV DKLESGEQVT QNVTLTDRKR KTRNRTALNS 120 AQSKDAKEGK SKKQRKCNDA LKNEKKEPKA DKKDQKKATE EPPTGYIHVR ARRGQATDSH 180 SLAERVRREK ISERMKILQR LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASVN 240 PMFYDFGVDL EALLVRPERV NGSIASPLPS LQQCNPTQPT AFPYTTTTAF VPANNYPLLD 300 TSAALLLQQG QRPNVFSQDN GSLLWDVEDQ RQKFLNSSGL NDNLCCFH

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MAAFSFQPHP FLLDSIFLPN TPTKISGFME EGNINSNCFS QVYPPEPIQE SPFDPKFHES  60
SCLDHSSKIV YSDNEPSVTK KQSTDDSTVV DKLESGEQVT QNVTLTDRKR KTRNRTALNS  120
AQSKDAKEGK SKKQRKCNDA LKNEKKEPKA DKKDQKKATE EPPTGYIHVR ARRGQATDSH  180
SLAERVRREK ISERMKILQR LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASVN  240
PMFYDFGVDL EALLVRPERV NGSIASPLPS LQQCNPTQPT AFPYTTTTAF VPANNYPLLD  300
TSAALLLQQG QRPNVFSQDN GSLLWDVEDQ RQKFLNSSGL NDNLCCFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	149	RKRKTRNRTALNSAQSKDAKEGKSKKQRKCNDALKNEKKEPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	5e-59	bHLH family protein