PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286085.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 440aa MW: 48685 Da PI: 6.0957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.8e-10	248	295	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_021286085.1 248 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 295 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MNRALPEMLQ CSDMTALERQ RARLKWQQEQ LQQQQLQQQE QQQSYFSELS GVFSSQASHV 60 EGFQSGLMSG DSVLGDMVMT RQLKPDPGLE TAWPELVKVD IPGMGFGPCG YGNGPSFDMN 120 YAISRTSSCS PAVAAAVAGE VVEVKGKELV VSEKMGSAVG RESFKKRKVD KLQNVKVVAE 180 DGSKRIKACA EEEESKITGP NTNKSSSNNN NNKKESSTDT SKENSKVSEV QKPDYIHVRA 240 RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF 300 LSMKLAAVYP RLDFNIENLF AKEVFPSCTT NFPTVGMSSE MANPPHLQFN PVQHVVSCCG 360 LEMGMNTPDM ALRRTISAPV SIPDASFLDS SCFPQIQPSA TWDVELQNLY NVAFDQGRST 420 SFPSQPFTGS IEASNLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MNRALPEMLQ CSDMTALERQ RARLKWQQEQ LQQQQLQQQE QQQSYFSELS GVFSSQASHV  60
EGFQSGLMSG DSVLGDMVMT RQLKPDPGLE TAWPELVKVD IPGMGFGPCG YGNGPSFDMN  120
YAISRTSSCS PAVAAAVAGE VVEVKGKELV VSEKMGSAVG RESFKKRKVD KLQNVKVVAE  180
DGSKRIKACA EEEESKITGP NTNKSSSNNN NNKKESSTDT SKENSKVSEV QKPDYIHVRA  240
RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF  300
LSMKLAAVYP RLDFNIENLF AKEVFPSCTT NFPTVGMSSE MANPPHLQFN PVQHVVSCCG  360
LEMGMNTPDM ALRRTISAPV SIPDASFLDS SCFPQIQPSA TWDVELQNLY NVAFDQGRST  420
SFPSQPFTGS IEASNLKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-60	bHLH family protein