PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285977.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 550aa MW: 60708.6 Da PI: 5.3674

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	366	408	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_021285977.1 366 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 408 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MLSRVNGGVV WMEDKEDEES ASWNRTNNSN SNNNNSVIME NKEEMGSLST FKSMLEEEWY 60 VANNSISSHQ DIRDLSFSPN LADHQDNILL HHHHQQQQQH HPVDSSSSCS PSSSVFNNLD 120 PSQVHYFLQP KPTLSSLLNV VSNNPLEHGF DLSEIGFLDN QATNATTLLN RGNAGVLGSF 180 TELSHGNQID TANLCAETQF SSSRMVQLPE NGAGFAGFQG FDENPGTALF LNRSKLLRPL 240 ESFPSVGAQP TLFQKRAALR KNLADNGGNF GLLGGGKVNA LNGIEGDEGK KEMDEENEKR 300 NIINRDDLED VSIDGSALNY DSDEFTENNK VEETLKNGGN TSNANSTVTG GDQKGKKKGL 360 PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE 420 SNPPSSSLTP TTSFHPLTPT PVTLPSRIKD ELCPSSLPSP NGQPARVEVR LREGKAVNIH 480 MFCGRRPGLL LSTMRALDDL GLDIQQAVIS CFNGFAMDIF RAEQCKEGQD IHPEQIKAVL 540 LDSAGFHNMI

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MLSRVNGGVV WMEDKEDEES ASWNRTNNSN SNNNNSVIME NKEEMGSLST FKSMLEEEWY  60
VANNSISSHQ DIRDLSFSPN LADHQDNILL HHHHQQQQQH HPVDSSSSCS PSSSVFNNLD  120
PSQVHYFLQP KPTLSSLLNV VSNNPLEHGF DLSEIGFLDN QATNATTLLN RGNAGVLGSF  180
TELSHGNQID TANLCAETQF SSSRMVQLPE NGAGFAGFQG FDENPGTALF LNRSKLLRPL  240
ESFPSVGAQP TLFQKRAALR KNLADNGGNF GLLGGGKVNA LNGIEGDEGK KEMDEENEKR  300
NIINRDDLED VSIDGSALNY DSDEFTENNK VEETLKNGGN TSNANSTVTG GDQKGKKKGL  360
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE  420
SNPPSSSLTP TTSFHPLTPT PVTLPSRIKD ELCPSSLPSP NGQPARVEVR LREGKAVNIH  480
MFCGRRPGLL LSTMRALDDL GLDIQQAVIS CFNGFAMDIF RAEQCKEGQD IHPEQIKAVL  540
LDSAGFHNMI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	374	KKKGLPAKNLMAERRRRKK
2	368	375	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-123	bHLH family protein