PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285838.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 739aa MW: 81934 Da PI: 8.936

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.6	1.2e-21	647	727	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r e+++r++ k +++lWee+s ++++g++rsp qCk+ w +l ++yk+ k +k++ + +pyf++++ XP_021285838.1 647 KWKPEEVKKLIKMRGELHSRFQVVKGRMALWEEISTSLMAEGISRSPGQCKSLWTSLVQKYKESKGEKKSH-----KGWPYFEDMN 727 7************************************************************99999986.....67****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence
MAMKITLVIP ALDSHTPIYA SSFTMELIKK RLKENGIFVP SRLKIFKTRK RFMAGPFEIE 60 PLRVTHSIPD CCGLVLRCAD GTILHTGDWK IDESPLDGKT FDRQFLEDLS KEGVTLMMSD 120 STNVLSPGRT ISESSVADAL LRHISATKGR IITTQFASNI HRLGSVKAAA DLTGRKLVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLII VTTGSQAEPR AALNLASYGS 240 SHSFKLNKED VILYSAKVIP GNESRVMKML NRISEIGSTI VMGKNEGLHT SGHGYRGELE 300 EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF 360 SSLGKENLQL MYSDGDKAFG TSTELCVDER LRIASEGIIV VSMEILRPQK IDGIMENSLK 420 GKIRITTRCL WLDKGKLLDA LHKVAHAALS SCPVNCPLAH MERTVSEVLR KMVRKYSGKR 480 PEVIAIALEN PAGVLSDELN ERLSGNSNVS FEIPTLRKVV DGHPKRSQPN KIKAEDDSNL 540 HLENASEESL EVSDGEVEKL LPEEDTTTSS PDSLERHTPN SEDSDEFWKS FIASSSPVNN 600 LVNDNNGLVA KKEHKSQLKS DGTASSGDES EIPSSLSKLS KPAKRNKWKP EEVKKLIKMR 660 GELHSRFQVV KGRMALWEEI STSLMAEGIS RSPGQCKSLW TSLVQKYKES KGEKKSHKGW 720 PYFEDMNKVF SDFEATATK

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence

MAMKITLVIP ALDSHTPIYA SSFTMELIKK RLKENGIFVP SRLKIFKTRK RFMAGPFEIE  60
PLRVTHSIPD CCGLVLRCAD GTILHTGDWK IDESPLDGKT FDRQFLEDLS KEGVTLMMSD  120
STNVLSPGRT ISESSVADAL LRHISATKGR IITTQFASNI HRLGSVKAAA DLTGRKLVFV  180
GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLII VTTGSQAEPR AALNLASYGS  240
SHSFKLNKED VILYSAKVIP GNESRVMKML NRISEIGSTI VMGKNEGLHT SGHGYRGELE  300
EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF  360
SSLGKENLQL MYSDGDKAFG TSTELCVDER LRIASEGIIV VSMEILRPQK IDGIMENSLK  420
GKIRITTRCL WLDKGKLLDA LHKVAHAALS SCPVNCPLAH MERTVSEVLR KMVRKYSGKR  480
PEVIAIALEN PAGVLSDELN ERLSGNSNVS FEIPTLRKVV DGHPKRSQPN KIKAEDDSNL  540
HLENASEESL EVSDGEVEKL LPEEDTTTSS PDSLERHTPN SEDSDEFWKS FIASSSPVNN  600
LVNDNNGLVA KKEHKSQLKS DGTASSGDES EIPSSLSKLS KPAKRNKWKP EEVKKLIKMR  660
GELHSRFQVV KGRMALWEEI STSLMAEGIS RSPGQCKSLW TSLVQKYKES KGEKKSHKGW  720
PYFEDMNKVF SDFEATATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein