PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285837.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 913aa MW: 101158 Da PI: 9.0373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.3	1.6e-21	821	901	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r e+++r++ k +++lWee+s ++++g++rsp qCk+ w +l ++yk+ k +k++ + +pyf++++ XP_021285837.1 821 KWKPEEVKKLIKMRGELHSRFQVVKGRMALWEEISTSLMAEGISRSPGQCKSLWTSLVQKYKESKGEKKSH-----KGWPYFEDMN 901 7************************************************************99999986.....67****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence
MQLGFLGGLS FSYSLYFTSF TPIKAPRKMA ASTALSLFPY GLYCQPNPGH RYISCSVGSP 60 TPLGTQRTKV PRKKSGRLDG ARKSMEDSVQ RKMEQFYEGT GGPPLRVLPI GGLGEIGMNC 120 MLVGNYDRYI LIDAGVMFPD YDELGVQKII PDTTFIKKWS HKIEAVVITH GHEDHIGALP 180 WVIPALDSHT PIYASSFTME LIKKRLKENG IFVPSRLKIF KTRKRFMAGP FEIEPLRVTH 240 SIPDCCGLVL RCADGTILHT GDWKIDESPL DGKTFDRQFL EDLSKEGVTL MMSDSTNVLS 300 PGRTISESSV ADALLRHISA TKGRIITTQF ASNIHRLGSV KAAADLTGRK LVFVGMSLRT 360 YLDAAWKDGK APIDPSTLVK VEDIDAYAPK DLIIVTTGSQ AEPRAALNLA SYGSSHSFKL 420 NKEDVILYSA KVIPGNESRV MKMLNRISEI GSTIVMGKNE GLHTSGHGYR GELEEVLKIV 480 KPQHFLPIHG ELLFLKEHEL LGKSTGIRHT TVIKNGEMLG VSHLRNRRVL SNGFSSLGKE 540 NLQLMYSDGD KAFGTSTELC VDERLRIASE GIIVVSMEIL RPQKIDGIME NSLKGKIRIT 600 TRCLWLDKGK LLDALHKVAH AALSSCPVNC PLAHMERTVS EVLRKMVRKY SGKRPEVIAI 660 ALENPAGVLS DELNERLSGN SNVSFEIPTL RKVVDGHPKR SQPNKIKAED DSNLHLENAS 720 EESLEVSDGE VEKLLPEEDT TTSSPDSLER HTPNSEDSDE FWKSFIASSS PVNNLVNDNN 780 GLVAKKEHKS QLKSDGTASS GDESEIPSSL SKLSKPAKRN KWKPEEVKKL IKMRGELHSR 840 FQVVKGRMAL WEEISTSLMA EGISRSPGQC KSLWTSLVQK YKESKGEKKS HKGWPYFEDM 900 NKVFSDFEAT ATK

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence

MQLGFLGGLS FSYSLYFTSF TPIKAPRKMA ASTALSLFPY GLYCQPNPGH RYISCSVGSP  60
TPLGTQRTKV PRKKSGRLDG ARKSMEDSVQ RKMEQFYEGT GGPPLRVLPI GGLGEIGMNC  120
MLVGNYDRYI LIDAGVMFPD YDELGVQKII PDTTFIKKWS HKIEAVVITH GHEDHIGALP  180
WVIPALDSHT PIYASSFTME LIKKRLKENG IFVPSRLKIF KTRKRFMAGP FEIEPLRVTH  240
SIPDCCGLVL RCADGTILHT GDWKIDESPL DGKTFDRQFL EDLSKEGVTL MMSDSTNVLS  300
PGRTISESSV ADALLRHISA TKGRIITTQF ASNIHRLGSV KAAADLTGRK LVFVGMSLRT  360
YLDAAWKDGK APIDPSTLVK VEDIDAYAPK DLIIVTTGSQ AEPRAALNLA SYGSSHSFKL  420
NKEDVILYSA KVIPGNESRV MKMLNRISEI GSTIVMGKNE GLHTSGHGYR GELEEVLKIV  480
KPQHFLPIHG ELLFLKEHEL LGKSTGIRHT TVIKNGEMLG VSHLRNRRVL SNGFSSLGKE  540
NLQLMYSDGD KAFGTSTELC VDERLRIASE GIIVVSMEIL RPQKIDGIME NSLKGKIRIT  600
TRCLWLDKGK LLDALHKVAH AALSSCPVNC PLAHMERTVS EVLRKMVRKY SGKRPEVIAI  660
ALENPAGVLS DELNERLSGN SNVSFEIPTL RKVVDGHPKR SQPNKIKAED DSNLHLENAS  720
EESLEVSDGE VEKLLPEEDT TTSSPDSLER HTPNSEDSDE FWKSFIASSS PVNNLVNDNN  780
GLVAKKEHKS QLKSDGTASS GDESEIPSSL SKLSKPAKRN KWKPEEVKKL IKMRGELHSR  840
FQVVKGRMAL WEEISTSLMA EGISRSPGQC KSLWTSLVQK YKESKGEKKS HKGWPYFEDM  900
NKVFSDFEAT ATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein