PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285380.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 332aa    MW: 35889.4 Da    PI: 5.2164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-16149195455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_021285380.1 149 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 195
                     6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MADQYGAPAS SNPEPEEIST LLDQLLHNSS ASSSSSSSCM QLKTKSIHHF PSHAPEFSTP  60
AADSRAGMAI PVEDQYRLGG SAVRAESEPR VNFSDPETYF GVNVKDSPDI ALSSAGEFSH  120
DSEAQEPSET PSNQERPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK  180
ASMLDEAIEY LKQLQLQVQM LSMRNGLSLY PMCLPGVLQP MQLPPTSVGY DEGNRFFSPN  240
TGAGTFSSNE ESSMNTSFNL SNPCTISNQP ILAPSGANVS NLEASFGFES SAEAHYGSFS  300
HSTSSKEICK EGRSQLQLEV NHAGNNSSSG VS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-43bHLH family protein