PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285342.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 351aa    MW: 38481.2 Da    PI: 8.564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.6e-052382761255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  XP_021285342.1 238 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 276
                     7788899*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MIQDWTDNGG SFTTSQSCYD LHLAKIKEEL SESLTRFTDM LSNTSSFGES HQLPPSPNYL  60
KNEQKDLHDL SEKLLFKTIS SGFPMFSAGE FYSATQNCSI PGGTALPSRR NFSQIYPSIN  120
ISNLNQASSA NIPGSFDMNL EALDLLSSAR FCRNSSFSHP SHDHNLGIYK ESPPFGLHHH  180
IQQSNQRAAY SPSKISPFTS ELSEAKRPST LPEPKATAAA AKKSRLESRA SCPPFKVRKE  240
KLGDRIAALQ QLVAPFGKTD TASVLMEAIG YIKFLQNQVE TLSVPYMKSS RNKASRSKQG  300
GSTMEDGNEE PKRDLRSRGL CLVPLSCMSY VTNDSGGGIW PPPPPNFSGG T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-83bHLH family protein