PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285341.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 425aa    MW: 46547.9 Da    PI: 7.3954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.65.9e-053123501255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  XP_021285341.1 312 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 350
                     7788899*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MESENVHHQH QLQDQLVGSS SLPIPSCYGV ASTHSWTPTP SFALNSGEFN PNHDGDILNS  60
RQKNDILVSP QNSSMIQDWT DNGGSFTTSQ SCYDLHLAKI KEELSESLTR FTDMLSNTSS  120
FGESHQLPPS PNYLKNEQKD LHDLSEKLLF KTISSGFPMF SAGEFYSATQ NCSIPGGTAL  180
PSRRNFSQIY PSINISNLNQ ASSANIPGSF DMNLEALDLL SSARFCRNSS FSHPSHDHNL  240
GIYKESPPFG LHHHIQQSNQ RAAYSPSKIS PFTSELSEAK RPSTLPEPKA TAAAAKKSRL  300
ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ NQVETLSVPY  360
MKSSRNKASR SKQGGSTMED GNEEPKRDLR SRGLCLVPLS CMSYVTNDSG GGIWPPPPPN  420
FSGGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-92bHLH family protein