PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285030.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 614aa MW: 66347.6 Da PI: 7.694

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	221	265	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_021285030.1 221 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 265 79****************************************985 PP
2	QLQ	62.6	1e-21	151	187	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k XP_021285030.1 151 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 187 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MDFGVVGLEG FVGSETTTTG LASLASDPET KQKWYGSGFL KQERSGNNED DWRSSKLAKI 60 DDFSASKAML LQQRNTLLRS NTSIFSDGQQ QQQMLSFSAP KSEALSVDRS SQNVTFPYFH 120 LTSPAYTRNT GYNTGGFNGA NMHGVLAGAR GPFTPSQWME LEHQALIYKY ITANVPIPSN 180 LLIPIRKALD SADFSSFSGG LLRPNTLGWG TFHLGFSNNT DPEPGRCRRT DGKKWRCSRD 240 AVADQKYCER HMNRGRHRSR KPVEGQSGHS AAATTVTTTK LMPTVSSSSA SVVGPASGGG 300 ESNSLAIAQQ HFKNLQPGGA SNLSAAAPLN RLLLNKDTVG ERMHDTAPGL SMISPTGDLK 360 SKESPFLIPK QQISYEDNSR NEFGVVSSDS LLNPSHKSSS LIKCRNFGSS HDLTSQDTES 420 QHSLRQFMDD WPKSQSDRSA ISWPEVDVQS DRTQLSISIP MAASDFMSST SSPNNEKVTL 480 SPLRLSREFD PIHMGLGVGS VINEPNQRQA NWIPITWETS MGGPLGEVLH STNSSTADCK 540 NSSALNLMTE GWDNSPRLGS SPTGVLQKTT FGSLSNSSAG SSPRAENNKT HEGASLCNDL 600 LGSTLVHSSS LPAL

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MDFGVVGLEG FVGSETTTTG LASLASDPET KQKWYGSGFL KQERSGNNED DWRSSKLAKI  60
DDFSASKAML LQQRNTLLRS NTSIFSDGQQ QQQMLSFSAP KSEALSVDRS SQNVTFPYFH  120
LTSPAYTRNT GYNTGGFNGA NMHGVLAGAR GPFTPSQWME LEHQALIYKY ITANVPIPSN  180
LLIPIRKALD SADFSSFSGG LLRPNTLGWG TFHLGFSNNT DPEPGRCRRT DGKKWRCSRD  240
AVADQKYCER HMNRGRHRSR KPVEGQSGHS AAATTVTTTK LMPTVSSSSA SVVGPASGGG  300
ESNSLAIAQQ HFKNLQPGGA SNLSAAAPLN RLLLNKDTVG ERMHDTAPGL SMISPTGDLK  360
SKESPFLIPK QQISYEDNSR NEFGVVSSDS LLNPSHKSSS LIKCRNFGSS HDLTSQDTES  420
QHSLRQFMDD WPKSQSDRSA ISWPEVDVQS DRTQLSISIP MAASDFMSST SSPNNEKVTL  480
SPLRLSREFD PIHMGLGVGS VINEPNQRQA NWIPITWETS MGGPLGEVLH STNSSTADCK  540
NSSALNLMTE GWDNSPRLGS SPTGVLQKTT FGSLSNSSAG SSPRAENNKT HEGASLCNDL  600
LGSTLVHSSS LPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-120	GRF family protein