PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284996.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family Trihelix
Protein Properties Length: 566aa    MW: 63547.9 Da    PI: 6.694
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.55e-3046130187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+  +r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++t  + +t+++fdqlea
  XP_021284996.1  46 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHKRTKDGRTGKT--DGKTYRFFDQLEA 130
                     8********************************************************************975..5556*******85 PP
2trihelix105.24.7e-33387472187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi +r++++ +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_021284996.1 387 RWPKPEVQALIGLRTNLDVKYQENGPKAPLWEEISAGMRKLGYSRSAKRCKEKWENINKYFKKVKESNKKR-AEDSKTCPYFHQLDA 472
                     8*********************************************************************8.89999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    
MAESSADASA APGIHEGSEI GMVGSNSGEE DKGRVDEGDR SFGGNRWPRQ ETLALLKIRS  60
DMDAVFRDSS LKGPLWEEVS RKLAELGYHR SAKKCKEKFE NVFKYHKRTK DGRTGKTDGK  120
TYRFFDQLEA LENLHSLQSQ SPPKPQTPTP TSAAMPWTNP PTASNIHVPS TTMNPTNVPQ  180
TNATPSINPT ISTQAVPIHS IGPYSNSIPS SFHNISSTLF STSTSSSTAS DDDSDQGSSK  240
KKRKWKEFFR RLTKEVIEKQ EELQNKFLRT IEKCEQERTA REEAWRIQEM ARVNREHEIL  300
IQERSTAAAK DAAVIAFLQK ISGQQPNTVQ VQPQENPQTT PPPPTAPLSL PPPLHQPQPQ  360
PPTPALNFDT SRMTNAANNV VLSSPSRWPK PEVQALIGLR TNLDVKYQEN GPKAPLWEEI  420
SAGMRKLGYS RSAKRCKEKW ENINKYFKKV KESNKKRAED SKTCPYFHQL DAIYKEKISK  480
NENSVGSSGY GVKPESKMVP LMVQPEQQWP PQQQEISQQA EAMMEEAERD QIQEDEEDIG  540
ESEEEEYERN AFELVANKTA PIGTAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-136Trihelix family protein