PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284902.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 326aa    MW: 36632.5 Da    PI: 5.5151
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  XP_021284902.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRISLFS 58
                    79******************************************987765 PP
2K-box18.39.9e-08109170970
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKn 70 
                      ++++ e+ qqe+ k k++i  ++r +R + G+  ++++L   e +  eq Le+ lk++R +K+
  XP_021284902.1 109 STDSQLEEFQQEILKCKSRIVDMERRLRIFEGDpsEITTLCQAEFH--EQILEETLKQVRLRKQ 170
                     68899***************************93356666666665..9*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRISLFSGK  60
KSIEEILGRF VNLSENERGR LRNKEFLLKA LGKLRGEADQ SCQAASPVST DSQLEEFQQE  120
ILKCKSRIVD MERRLRIFEG DPSEITTLCQ AEFHEQILEE TLKQVRLRKQ VLQEKYSSPG  180
PPPTTQVHLP PETADVNGFV TGSSSSILEW IPQRDPQVQI LNFLGSNGLL PPRDQSQPGA  240
ENILPPPQST LLHGEEINVD DQLSPRSGLE NDNIVQRPEF GNLSPWTELY PTGNDPFPDT  300
QPGGRALLEL YLSQFTPSSI STMNQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-56MIKC_MADS family protein