PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021284812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24231.5 Da PI: 8.3994 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.4 | 5.4e-29 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ + p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+q+ XP_021284812.1 2 SCNGCRVLRKGCSETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPETQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHLCQA 96 6********************************************************************************************** PP DUF260 91 kaelallk 98 +a+++l++ XP_021284812.1 97 AADTVLQG 104 **998775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MSCNGCRVLR KGCSETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPETQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHLCQAAADT VLQGGALRPI PGILAGVWTP 120 SCDESSVRFC ANSGDFQSRY AQSKPLMTMM MMENKSASAA SDLSLSLSTK LGGGRRGSGR 180 RYEVERKRAR AAAASLYSEE SEITTFESNE NEGSQERKIL NLFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-63 | LBD family protein |