PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284715.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 644aa MW: 71317.1 Da PI: 4.8396

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.3	2.3e-10	492	535	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT+++ el++ a++q+G++ +++I + ++ gR++ q+k+++ + XP_021284715.1 492 RAKWTKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 535 569***************88.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MGKRYFDLDP FDDVANQVTN NGRAVGKFQP KTRPKDADGV VDDCRSSQGM TSSQVAVTDS 60 LLSEVAISNG CHDSHSSFGR SVGENADIFS GLECLDQFLT QSSNNNGTIQ IDDDRTGAQE 120 AGAFPDVETQ DIMSGATIAS GRHAGKFKPK TRLQTSVVPS QPAVVDIAMH PPNSPFIPSE 180 TMCMENSIPD RSPMDLGAFI PPDPSTSEFP VNEELTNLTE ASNPGVTLSG DVPSMPGKLC 240 SNSRKRKASP IPNPSQKSKQ SSASDGGNEN GKATKQLRKQ VTSPKLVDDH EDGTCNDDGP 300 ATEPPTSSAI DEDRDDGDDD DEYNAESAFS KRRTSRRSKK PMVENEKPPR KRKTTKKKQV 360 EKQKKVNEAS DQPTEEQPRK FSHSTRRKRR FVDESLLHTP EDEIDFAKVA LKDIILLADY 420 KERIAKKGAK ASKIQLNNQS TKDTFPEENA HNEESSIASE QDQGFTDDQM SGGAQSSSFF 480 LNYQSYMDKE PRAKWTKQDT ELFYGAIRQF GPDFSLIQQL FPGRSRHQIK LKFKNEERRY 540 PLRLSEALAS RTKDHSYFER VIEHLHQVAG QAERESNGDV SIDLTREKAA LTPETNGEAT 600 KAELDEDEAV GDQEADVAED HSTFKSDETD DDHEDILSSY RSAF

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MGKRYFDLDP FDDVANQVTN NGRAVGKFQP KTRPKDADGV VDDCRSSQGM TSSQVAVTDS  60
LLSEVAISNG CHDSHSSFGR SVGENADIFS GLECLDQFLT QSSNNNGTIQ IDDDRTGAQE  120
AGAFPDVETQ DIMSGATIAS GRHAGKFKPK TRLQTSVVPS QPAVVDIAMH PPNSPFIPSE  180
TMCMENSIPD RSPMDLGAFI PPDPSTSEFP VNEELTNLTE ASNPGVTLSG DVPSMPGKLC  240
SNSRKRKASP IPNPSQKSKQ SSASDGGNEN GKATKQLRKQ VTSPKLVDDH EDGTCNDDGP  300
ATEPPTSSAI DEDRDDGDDD DEYNAESAFS KRRTSRRSKK PMVENEKPPR KRKTTKKKQV  360
EKQKKVNEAS DQPTEEQPRK FSHSTRRKRR FVDESLLHTP EDEIDFAKVA LKDIILLADY  420
KERIAKKGAK ASKIQLNNQS TKDTFPEENA HNEESSIASE QDQGFTDDQM SGGAQSSSFF  480
LNYQSYMDKE PRAKWTKQDT ELFYGAIRQF GPDFSLIQQL FPGRSRHQIK LKFKNEERRY  540
PLRLSEALAS RTKDHSYFER VIEHLHQVAG QAERESNGDV SIDLTREKAA LTPETNGEAT  600
KAELDEDEAV GDQEADVAED HSTFKSDETD DDHEDILSSY RSAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	353	KRRTSRRSKKPMVENEKPPRKRK
2	347	353	KPPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-43	MYB_related family protein