PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284714.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 704aa MW: 77875.9 Da PI: 4.6765

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.5e-10	552	595	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT+++ el++ a++q+G++ +++I + ++ gR++ q+k+++ + XP_021284714.1 552 RAKWTKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 595 569***************88.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MDDFDIFSDK SPVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVITQS LSSLDNRLTS 60 PRGLSVDTST TSGTEESLKN NYEDLSQIAV TKADDVGFID APRSDVPLTV NDHDSHSVPN 120 IWAKDVDFDL DPFDDVANQV TNNGRAVGKF QPKTRPKDAD GVVDDCRSSQ GMTSSQVAVT 180 DSLLSEVAIS NGCHDSHSSF GRSVGENADI FSGLECLDQF LTQSSNNNGT IQIDDDRTGA 240 QEAGAFPDVE TQDIMSGATI ASDPSTSEFP VNEELTNLTE ASNPGVTLSG DVPSMPGKLC 300 SNSRKRKASP IPNPSQKSKQ SSASDGGNEN GKATKQLRKQ VTSPKLVDDH EDGTCNDDGP 360 ATEPPTSSAI DEDRDDGDDD DEYNAESAFS KRRTSRRSKK PMVENEKPPR KRKTTKKKQV 420 EKQKKVNEAS DQPTEEQPRK FSHSTRRKRR FVDESLLHTP EDEIDFAKVA LKDIILLADY 480 KERIAKKGAK ASKIQLNNQS TKDTFPEENA HNEESSIASE QDQGFTDDQM SGGAQSSSFF 540 LNYQSYMDKE PRAKWTKQDT ELFYGAIRQF GPDFSLIQQL FPGRSRHQIK LKFKNEERRY 600 PLRLSEALAS RTKDHSYFER VIEHLHQVAG QAERESNGDV SIDLTREKAA LTPETNGEAT 660 KAELDEDEAV GDQEADVAED HSTFKSDETD DDHEDILSSY RSAF

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MDDFDIFSDK SPVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVITQS LSSLDNRLTS  60
PRGLSVDTST TSGTEESLKN NYEDLSQIAV TKADDVGFID APRSDVPLTV NDHDSHSVPN  120
IWAKDVDFDL DPFDDVANQV TNNGRAVGKF QPKTRPKDAD GVVDDCRSSQ GMTSSQVAVT  180
DSLLSEVAIS NGCHDSHSSF GRSVGENADI FSGLECLDQF LTQSSNNNGT IQIDDDRTGA  240
QEAGAFPDVE TQDIMSGATI ASDPSTSEFP VNEELTNLTE ASNPGVTLSG DVPSMPGKLC  300
SNSRKRKASP IPNPSQKSKQ SSASDGGNEN GKATKQLRKQ VTSPKLVDDH EDGTCNDDGP  360
ATEPPTSSAI DEDRDDGDDD DEYNAESAFS KRRTSRRSKK PMVENEKPPR KRKTTKKKQV  420
EKQKKVNEAS DQPTEEQPRK FSHSTRRKRR FVDESLLHTP EDEIDFAKVA LKDIILLADY  480
KERIAKKGAK ASKIQLNNQS TKDTFPEENA HNEESSIASE QDQGFTDDQM SGGAQSSSFF  540
LNYQSYMDKE PRAKWTKQDT ELFYGAIRQF GPDFSLIQQL FPGRSRHQIK LKFKNEERRY  600
PLRLSEALAS RTKDHSYFER VIEHLHQVAG QAERESNGDV SIDLTREKAA LTPETNGEAT  660
KAELDEDEAV GDQEADVAED HSTFKSDETD DDHEDILSSY RSAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	413	KRRTSRRSKKPMVENEKPPRKRK
2	407	413	KPPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-43	MYB_related family protein