PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284713.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 710aa MW: 78458.6 Da PI: 4.6765

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.5e-10	558	601	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT+++ el++ a++q+G++ +++I + ++ gR++ q+k+++ + XP_021284713.1 558 RAKWTKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 601 569***************88.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MDDFDIFSDK SPVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVITQS LSSLDNRLTS 60 PRGLSVDTST TSGTEESLKN NYEDLSQIAV TKADDVGFID APRSDVPLTV NDHDSHSVPN 120 IWAKDVDFDL DPFDDVANQV TNNGRAVGKF QPKTRPKDAD GVVDDCRSSQ GMTSSQVAVT 180 DSLLSEVAIS NGCHDSHSSF GRSVGENADI FSGLECLDQF LTQSSNNNGT IQIDDDRTGA 240 QEAGAFPDVE TQDIMSGATI ASGAFIPPDP STSEFPVNEE LTNLTEASNP GVTLSGDVPS 300 MPGKLCSNSR KRKASPIPNP SQKSKQSSAS DGGNENGKAT KQLRKQVTSP KLVDDHEDGT 360 CNDDGPATEP PTSSAIDEDR DDGDDDDEYN AESAFSKRRT SRRSKKPMVE NEKPPRKRKT 420 TKKKQVEKQK KVNEASDQPT EEQPRKFSHS TRRKRRFVDE SLLHTPEDEI DFAKVALKDI 480 ILLADYKERI AKKGAKASKI QLNNQSTKDT FPEENAHNEE SSIASEQDQG FTDDQMSGGA 540 QSSSFFLNYQ SYMDKEPRAK WTKQDTELFY GAIRQFGPDF SLIQQLFPGR SRHQIKLKFK 600 NEERRYPLRL SEALASRTKD HSYFERVIEH LHQVAGQAER ESNGDVSIDL TREKAALTPE 660 TNGEATKAEL DEDEAVGDQE ADVAEDHSTF KSDETDDDHE DILSSYRSAF

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MDDFDIFSDK SPVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVITQS LSSLDNRLTS  60
PRGLSVDTST TSGTEESLKN NYEDLSQIAV TKADDVGFID APRSDVPLTV NDHDSHSVPN  120
IWAKDVDFDL DPFDDVANQV TNNGRAVGKF QPKTRPKDAD GVVDDCRSSQ GMTSSQVAVT  180
DSLLSEVAIS NGCHDSHSSF GRSVGENADI FSGLECLDQF LTQSSNNNGT IQIDDDRTGA  240
QEAGAFPDVE TQDIMSGATI ASGAFIPPDP STSEFPVNEE LTNLTEASNP GVTLSGDVPS  300
MPGKLCSNSR KRKASPIPNP SQKSKQSSAS DGGNENGKAT KQLRKQVTSP KLVDDHEDGT  360
CNDDGPATEP PTSSAIDEDR DDGDDDDEYN AESAFSKRRT SRRSKKPMVE NEKPPRKRKT  420
TKKKQVEKQK KVNEASDQPT EEQPRKFSHS TRRKRRFVDE SLLHTPEDEI DFAKVALKDI  480
ILLADYKERI AKKGAKASKI QLNNQSTKDT FPEENAHNEE SSIASEQDQG FTDDQMSGGA  540
QSSSFFLNYQ SYMDKEPRAK WTKQDTELFY GAIRQFGPDF SLIQQLFPGR SRHQIKLKFK  600
NEERRYPLRL SEALASRTKD HSYFERVIEH LHQVAGQAER ESNGDVSIDL TREKAALTPE  660
TNGEATKAEL DEDEAVGDQE ADVAEDHSTF KSDETDDDHE DILSSYRSAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	397	419	KRRTSRRSKKPMVENEKPPRKRK
2	413	419	KPPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	6e-43	MYB_related family protein