PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284700.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 1025aa MW: 117642 Da PI: 6.6143

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.9	5.2e-26	210	296	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ +GFsvrk+ ++sk +g++++r+f+Cskeg+r++++++ ++ +++r+etrtgC a++ ++++ +gk++v+++e +HnH+ XP_021284700.1 210 RFYNKYARLLGFSVRKDWVNRSKIHGQVVSRKFTCSKEGYRRKDQRD-VNVKKHRKETRTGCLAHMIITRQPNGKYRVSHFEANHNHD 296 5******************************************99.999**********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence
MAILKSLLCL ISWQAAALLL LLAVAAVQSQ TAKAQSCPNE LNSLNVCAPF VVPGVPEATP 60 SSDCCAALQS VQHDCLCNTL RIASRLPSRC NIPALSCVPF FFSQGDRTRI CYPDSLLKSD 120 ISSVENDDSL VTPRSMNRDD DHLGNLHDED ADNRAQTSDK LDLNVEQNCR SPKVNPVHTT 180 QSSLPSKGET NADGVLKIGI EFDSDEHAYR FYNKYARLLG FSVRKDWVNR SKIHGQVVSR 240 KFTCSKEGYR RKDQRDVNVK KHRKETRTGC LAHMIITRQP NGKYRVSHFE ANHNHDNINP 300 NNEQTLQLQK ELCFAQASET DQPNNSETQN PAFDLMRRRF LVRESLDCLA KDYDNHLRSE 360 RVRDMKEGEA GHLLRYFLRQ HFENPSFFYA IQLDIDDKVS NIFWADDNMV VDYNYFGDVV 420 CLDTSCRTNK DFKPFVQFIG VNHHNQVVIF AAALLYDDTV ESLKWLFHTF LEAMSGKKPK 480 VILTDQDATV VEAISSVLPE TSHHICVWQM HQNALKHLSY VLKDAEAFAN DFRSCIYDHK 540 DENDFIHAWE AMLEVYNLKQ NEWLKWMYRE REKWAVVYDR NTFFIDMKRS HLGESLSNKL 600 RRHLNSDQDM LQFFKHFERV VYEQRYKEIE ASDEMSHCKP KLMGNVILLK HASEIYTPKA 660 FEVFQCEYEK CLNVVANQCS QNGYLSEYKV NMFGQSQEYT VTFDSSDDTV ICSCMKFEYV 720 GFLCSHALRV LDHRNIKVVP SQYILRRWTK DARIGCARED KDFIMQENPK LVAARRYRDM 780 CRSILNISAR AVESDDAFHF ASRQLNEVIV GVEKILTLKA EEAQVIGSSS SGASASDSEN 840 AEIFLDGHAI EDQDESSRVQ SKMENEAVVP HRRKQKNVPE RGSKTKRVQN KRSNSPNTIT 900 CISSPSPTYV SPQASGPAPV MQGLFNFEAN QVVQCIYQQP NMVMDQEPNA EMYQQPNFYT 960 DQHDSLSQTQ LLQEPLIRST YQESASNSTH LRQAMELDIQ PPHSSSFLLY DHRYRTSDTS 1020 FLGPK

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence

MAILKSLLCL ISWQAAALLL LLAVAAVQSQ TAKAQSCPNE LNSLNVCAPF VVPGVPEATP  60
SSDCCAALQS VQHDCLCNTL RIASRLPSRC NIPALSCVPF FFSQGDRTRI CYPDSLLKSD  120
ISSVENDDSL VTPRSMNRDD DHLGNLHDED ADNRAQTSDK LDLNVEQNCR SPKVNPVHTT  180
QSSLPSKGET NADGVLKIGI EFDSDEHAYR FYNKYARLLG FSVRKDWVNR SKIHGQVVSR  240
KFTCSKEGYR RKDQRDVNVK KHRKETRTGC LAHMIITRQP NGKYRVSHFE ANHNHDNINP  300
NNEQTLQLQK ELCFAQASET DQPNNSETQN PAFDLMRRRF LVRESLDCLA KDYDNHLRSE  360
RVRDMKEGEA GHLLRYFLRQ HFENPSFFYA IQLDIDDKVS NIFWADDNMV VDYNYFGDVV  420
CLDTSCRTNK DFKPFVQFIG VNHHNQVVIF AAALLYDDTV ESLKWLFHTF LEAMSGKKPK  480
VILTDQDATV VEAISSVLPE TSHHICVWQM HQNALKHLSY VLKDAEAFAN DFRSCIYDHK  540
DENDFIHAWE AMLEVYNLKQ NEWLKWMYRE REKWAVVYDR NTFFIDMKRS HLGESLSNKL  600
RRHLNSDQDM LQFFKHFERV VYEQRYKEIE ASDEMSHCKP KLMGNVILLK HASEIYTPKA  660
FEVFQCEYEK CLNVVANQCS QNGYLSEYKV NMFGQSQEYT VTFDSSDDTV ICSCMKFEYV  720
GFLCSHALRV LDHRNIKVVP SQYILRRWTK DARIGCARED KDFIMQENPK LVAARRYRDM  780
CRSILNISAR AVESDDAFHF ASRQLNEVIV GVEKILTLKA EEAQVIGSSS SGASASDSEN  840
AEIFLDGHAI EDQDESSRVQ SKMENEAVVP HRRKQKNVPE RGSKTKRVQN KRSNSPNTIT  900
CISSPSPTYV SPQASGPAPV MQGLFNFEAN QVVQCIYQQP NMVMDQEPNA EMYQQPNFYT  960
DQHDSLSQTQ LLQEPLIRST YQESASNSTH LRQAMELDIQ PPHSSSFLLY DHRYRTSDTS  1020
FLGPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1 family protein