PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284692.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 496aa MW: 51745.2 Da PI: 9.4717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021284692.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	15.8	4.1e-05	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_021284692.1 145 WKCERCSKKYAVQSDWKAHMKTC 167 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MVELENSSPM TVSTASGEAS ASSSGNQIQG TQPTGGGPPK KKRNLPGMPD PDAEVIALSP 60 KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIRKRVY VCPEPSCVHH 120 NPARALGDLT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTIF 180 SRRDSFITHR AFCDALAEES ARAQTLAIAN TEGNVNASGN GNGNGKTMVG GGAATSPPPQ 240 PLTPSSTSVV SPGLSIQSSE IPDNPMRLSP PTTAATSSST SSSNVFASIF APNSQPSKIP 300 APSPILQSVA PLERTSLSLS SPLYLSSNGS SIFTGPEHDH CRYAPSPRPA MSATALLQKA 360 AQMGAAASNP SLLRGLGLAV SSTSTAGQDP IVKPESSSLT AGLGLGLPSN GSSNLTDHMM 420 DPSSLFGNKP TTLDLLGLGM GDGGASSSGL SALLTSFGGG FNVGAATTSY AAGSGSSPRE 480 TWEGAPERKP NGPAML

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MVELENSSPM TVSTASGEAS ASSSGNQIQG TQPTGGGPPK KKRNLPGMPD PDAEVIALSP  60
KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIRKRVY VCPEPSCVHH  120
NPARALGDLT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTIF  180
SRRDSFITHR AFCDALAEES ARAQTLAIAN TEGNVNASGN GNGNGKTMVG GGAATSPPPQ  240
PLTPSSTSVV SPGLSIQSSE IPDNPMRLSP PTTAATSSST SSSNVFASIF APNSQPSKIP  300
APSPILQSVA PLERTSLSLS SPLYLSSNGS SIFTGPEHDH CRYAPSPRPA MSATALLQKA  360
AQMGAAASNP SLLRGLGLAV SSTSTAGQDP IVKPESSSLT AGLGLGLPSN GSSNLTDHMM  420
DPSSLFGNKP TTLDLLGLGM GDGGASSSGL SALLTSFGGG FNVGAATTSY AAGSGSSPRE  480
TWEGAPERKP NGPAML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-111	C2H2 family protein