PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284667.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 331aa    MW: 37783.7 Da    PI: 4.487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12165208654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_021284667.1 165 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 208
                     589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MEFNEQSFLE ELLALRRDSW DTIPTEMNEI FSSGWNFDCF DENPASFLPN SFCQEFSVPF  60
EQDFNYNFNE VHCPFGDEFS AAQVTDSSNN TFDTPPFPVQ EDYSLNIVEE GESGFLADKL  120
HKLDVQAACK AEPIQSPEEP VFNMGTCIDR KNRAKKLAGQ PSKNLMAERR RRKRLNDRLS  180
MLRSIVPKIS KMDRTSILGD TIDYMKELLE RIKSLQQEIE AGSNELNMAH IFKDVKPNEI  240
LVRNTPKFEV ERRNVDTRIE ICCTGKPGLM LSTVTTLEAL GLEIQQCVIS CFNDFAMQAS  300
CSEDLEQRTL LSSEDIKQAL FRNAGYGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-86bHLH family protein