PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284453.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ERF

Protein Properties

Length: 442aa MW: 47566.2 Da PI: 6.8039

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.1	6e-20	216	265	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++ a+++++g XP_021284453.1 216 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 265 7******.******7.....337***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MCLLNKVAHQ RGSGQYVRFP PVGDGGEEQQ EDSYTQEIQS QLSQIRESNQ PMIQHRNNTE 60 MVFGPQGQAT EMSAMVSALT HVVSGQRAAA DWVYGANLAG MVTPSFGHSG SAASPSSYSS 120 SASPSGSGSA SGSGLWIGQK RGREEEGAAQ LIESVTRVQR PFGDFRGSHA DSSSGATTVT 180 EETTTVVAPP TTTAPSTTST ETAAAAYEET GERRRRYRGV RQRPWGKWAA EIRDPHKAAR 240 VWLGTFDTAE AAARAYDDAA LRFRGNRAKL NFPEHVRLVP QPMQNFPATQ TSVSTSLTTH 300 FPPSHSTHMP PYYQSQPLQS SNVDMLRDYW QYSQLLQSST DFHGQQTTSL LEQMIQPSQL 360 ANIQQPMLSS SLSSLPSSFA ASSAASSASG SSSSSSASFP LLFAEQQQMG ILRQQFNQTQ 420 ASGSDFPVPP SSPPGHYPSS TG

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MCLLNKVAHQ RGSGQYVRFP PVGDGGEEQQ EDSYTQEIQS QLSQIRESNQ PMIQHRNNTE  60
MVFGPQGQAT EMSAMVSALT HVVSGQRAAA DWVYGANLAG MVTPSFGHSG SAASPSSYSS  120
SASPSGSGSA SGSGLWIGQK RGREEEGAAQ LIESVTRVQR PFGDFRGSHA DSSSGATTVT  180
EETTTVVAPP TTTAPSTTST ETAAAAYEET GERRRRYRGV RQRPWGKWAA EIRDPHKAAR  240
VWLGTFDTAE AAARAYDDAA LRFRGNRAKL NFPEHVRLVP QPMQNFPATQ TSVSTSLTTH  300
FPPSHSTHMP PYYQSQPLQS SNVDMLRDYW QYSQLLQSST DFHGQQTTSL LEQMIQPSQL  360
ANIQQPMLSS SLSSLPSSFA ASSAASSASG SSSSSSASFP LLFAEQQQMG ILRQQFNQTQ  420
ASGSDFPVPP SSPPGHYPSS TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	217	ERRRRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33710.1	3e-22	ERF family protein