PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284413.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 437aa MW: 50603.5 Da PI: 6.9624

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.6	2.6e-26	112	208	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d XP_021284413.1 112 KWTDKMVKLLITAVSYIGEDAAGDCggekrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCRVVENPALLD 206 7**************9999988777788899999********************************************5588888887777 PP trihelix 84 ql 85 + XP_021284413.1 207 VI 208 55 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MISGGGSYGG LDLQGSMRVH HHAQHPHNIH QHHHPNPRQG ASVNPSIHEG FPLTMGTMQN 60 CDQTIAMTDY NKGERRKSSV SDEMKPSYTE EGVDGHNDGT KGKKGSPWQR VKWTDKMVKL 120 LITAVSYIGE DAAGDCGGEK RRKFAVLQKK GKWKSVSKVM AERGYHVSPQ QCEDKFNDLN 180 KRYKKLNDML GRGTSCRVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY EEMCSYHNGN 240 RLHLPHDPQL QRSLQLALRS RDDHENDDAR RHQHDDLDDD DHDMETDDHD EFEENHALHG 300 DSRGMYGVLG GSAKRSRQGQ VHEDACFQNL LNSQDCNKSS FSYPPITQAD MNQVLPDNTR 360 AAWLQKQWIE SRSLQLEEQK LQIQVEMLEL EKQRFKWQRF SKKRDRELEK MRMENERMKL 420 ENERMALELK QKEFSAD

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MISGGGSYGG LDLQGSMRVH HHAQHPHNIH QHHHPNPRQG ASVNPSIHEG FPLTMGTMQN  60
CDQTIAMTDY NKGERRKSSV SDEMKPSYTE EGVDGHNDGT KGKKGSPWQR VKWTDKMVKL  120
LITAVSYIGE DAAGDCGGEK RRKFAVLQKK GKWKSVSKVM AERGYHVSPQ QCEDKFNDLN  180
KRYKKLNDML GRGTSCRVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY EEMCSYHNGN  240
RLHLPHDPQL QRSLQLALRS RDDHENDDAR RHQHDDLDDD DHDMETDDHD EFEENHALHG  300
DSRGMYGVLG GSAKRSRQGQ VHEDACFQNL LNSQDCNKSS FSYPPITQAD MNQVLPDNTR  360
AAWLQKQWIE SRSLQLEEQK LQIQVEMLEL EKQRFKWQRF SKKRDRELEK MRMENERMKL  420
ENERMALELK QKEFSAD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	144	EKRRKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-168	Trihelix family protein