PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284326.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 279aa    MW: 31982.7 Da    PI: 5.1788
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1857110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  XP_021284326.1  57 KKRRLSIDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 110
                     5568999**********************************************9 PP
2HD-ZIP_I/II128.62.6e-4156148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy+ Lk++yd+lk + ++Leke+e+L+ +lke
  XP_021284326.1  56 EKKRRLSIDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYAILKASYDSLKLDYNNLEKEKEALTLKLKE 148
                     69*************************************************************************************999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MKRLSSSGSL DALISICPPK EEKNSKNKQV YSREFQAMLD SLDEEDSIEE AGQATEKKRR  60
LSIDQVKALE KNFEVENKLE PERKVKLAEE LGLQPRQVAI WFQNRRARWK TKQLEKDYAI  120
LKASYDSLKL DYNNLEKEKE ALTLKLKELK AKLKEENSES SNSVKEDSPN FPQHAKDHDL  180
CGNNDDSDRI VKEESNVNAQ LLISPASSSS FPFNGSSSSS DSSNHKSWFQ PFDSRVILGN  240
MYHPQLVKVE EQCMLTAEEF CNFFSVDQAP TLQWYFTGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15786KKRRLSIDQVKALEKNFEVENKLEPERKVK
2105113RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.19e-50HD-ZIP family protein