PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021283583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 455aa MW: 49451.2 Da PI: 8.5088 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.5 | 1.6e-11 | 65 | 91 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021283583.1 65 PGEPDCSYYIRTGLCRFGATCRFNHPP 91 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 112 | 136 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_021283583.1 112 QPECQYYLKTGTCKFGATCKFHHPR 136 799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.1e-12 | 158 | 182 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_021283583.1 158 ETECAYYLRTGQCKFGSTCKFHHPQ 182 578********************97 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 316 | 342 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G C+F+H++ XP_021283583.1 316 PGQPECQFYMKTGDCKFGTVCRFHHPR 342 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.7 | 4e-13 | 362 | 388 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ XP_021283583.1 362 PGEPLCIFYSRYGICKFGPSCKFNHPM 388 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence |
MTAEWNSXFD AGIPMSRTAA AVAAAAAVAV TEGTSLSPSL NQDALWQMNL RSSETMESGP 60 YPERPGEPDC SYYIRTGLCR FGATCRFNHP PNRKLAIAAA RMKGEFPERA GQPECQYYLK 120 TGTCKFGATC KFHHPRDKAG IAGRVSLNIL GYPLRPNETE CAYYLRTGQC KFGSTCKFHH 180 PQPTNMMVSV RGSPIYQTVP SPTTPGQQSY AGGITNWSRA SFIPSPRWQG PSSYAPLILP 240 QGVVSVPGWN AYSGQLASVS SSENLQQTNG NNQYGTSHQN ESATAGSQAS FSQFRSGSVP 300 VGYYALQREN VFPERPGQPE CQFYMKTGDC KFGTVCRFHH PRERVLPAPD CLLSPIGLPL 360 RPGEPLCIFY SRYGICKFGP SCKFNHPMGI FTYNYSTSSP SDAPVHRLLG SSSGTAGLNL 420 SSEGLVEAGS TKARRLSLSE NRQLSSSDDN IDTEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |