PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283548.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 414aa MW: 45863.6 Da PI: 7.0862

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.5e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl XP_021283548.1 47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP
2	Myb_DNA-binding	65.8	7.8e-21	49	100	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++++av+qlGg t+kt+++ mg g+tl+++ks++qky+ XP_021283548.1 49 RLKWTPDLHERFIEAVNQLGGAdkaTPKTVMKLMGiPGLTLYHLKSHLQKYR 100 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MYHHHHQHQG KNIHPSSRMP IPPERHLFLQ GGNGPGDSGL VLSTDAKPRL KWTPDLHERF 60 IEAVNQLGGA DKATPKTVMK LMGIPGLTLY HLKSHLQKYR LSKNLHGQAN NGSNKIGAVA 120 MAGDRMSEAN GTHVNNLSIG PQANKGLQIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQAVLEK AQETLGRQNL GSVGLEAAKV QLSELVSKVS NQCLNSGFPD LKDLQGLCPQ 240 QTQATPPTDC SMDSCLTSCE GSQKEQEIHN NGMCLRPYNT SSALLEQREI AEDPLLPQTE 300 LKSFEDIKEN KMFLSSLGKD AERRMFFADR SSSDLSMSVG LQEAKGNGGN CSSFSEAKFK 360 GRNEDDSFLD RGNKRADEVN RLQYFATKLD LNVHEENDAA SSCKQFDLNG LSWS

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MYHHHHQHQG KNIHPSSRMP IPPERHLFLQ GGNGPGDSGL VLSTDAKPRL KWTPDLHERF  60
IEAVNQLGGA DKATPKTVMK LMGIPGLTLY HLKSHLQKYR LSKNLHGQAN NGSNKIGAVA  120
MAGDRMSEAN GTHVNNLSIG PQANKGLQIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQAVLEK AQETLGRQNL GSVGLEAAKV QLSELVSKVS NQCLNSGFPD LKDLQGLCPQ  240
QTQATPPTDC SMDSCLTSCE GSQKEQEIHN NGMCLRPYNT SSALLEQREI AEDPLLPQTE  300
LKSFEDIKEN KMFLSSLGKD AERRMFFADR SSSDLSMSVG LQEAKGNGGN CSSFSEAKFK  360
GRNEDDSFLD RGNKRADEVN RLQYFATKLD LNVHEENDAA SSCKQFDLNG LSWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-163	G2-like family protein