PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283524.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 502aa MW: 55506.7 Da PI: 5.0306

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.6	6.3e-36	25	116	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sws+ +nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_021283524.1 25 FLSKTYDMVDDPSTNSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 110 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k XP_021283524.1 111 ISRRKP 116 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MDSLHDSISA ANAAAATNGN TVPPFLSKTY DMVDDPSTNS VVSWSSGNNS FVVWKVPEFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT ISRRKPANVH 120 NNQQPQVQSS SVGACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQT TDNQLQAVGQ 180 RVQVMEQRQQ QMMSFLAKAM QSPGFLSQLV QQQNESNRRL TGGNKKRRLP RQDEENLTGE 240 HGAISPNGQI VKFQPSLNEA AKAMLHQILK MNTSSRLESS MNCPGAFMID GVPPSNALDS 300 GSSSSRISGV TLSEVPPASG QSYLQAESGF PDTCPSTASH LTTEHTKVDQ ISEINVHESH 360 KDAAFPNFPQ MQGIVPDNTV GFTDASLAGS ERGNAEYVDQ MSAGLNGGMP VQTDDFSTDQ 420 DMDILLEGTP KLPAINDVFW EQFLTTSPLT EDTDEITSSS LENGANTEQE SLLVQENGWD 480 KIPHMNHLTE QMGLLTSDSR RA

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MDSLHDSISA ANAAAATNGN TVPPFLSKTY DMVDDPSTNS VVSWSSGNNS FVVWKVPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT ISRRKPANVH  120
NNQQPQVQSS SVGACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQT TDNQLQAVGQ  180
RVQVMEQRQQ QMMSFLAKAM QSPGFLSQLV QQQNESNRRL TGGNKKRRLP RQDEENLTGE  240
HGAISPNGQI VKFQPSLNEA AKAMLHQILK MNTSSRLESS MNCPGAFMID GVPPSNALDS  300
GSSSSRISGV TLSEVPPASG QSYLQAESGF PDTCPSTASH LTTEHTKVDQ ISEINVHESH  360
KDAAFPNFPQ MQGIVPDNTV GFTDASLAGS ERGNAEYVDQ MSAGLNGGMP VQTDDFSTDQ  420
DMDILLEGTP KLPAINDVFW EQFLTTSPLT EDTDEITSSS LENGANTEQE SLLVQENGWD  480
KIPHMNHLTE QMGLLTSDSR RA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	1e-122	HSF family protein