PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283431.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 572aa MW: 61253.2 Da PI: 9.5333

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.4	1.5e-24	198	240	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e XP_021283431.1 198 LEPGRCRRTDGKKWRCSRDVXPDQKYCERHMHRGRPRSRKPVE 240 69**************************************987 PP
2	QLQ	57.5	4.1e-20	136	170	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT+aQ+q+L++Q++++Ky+ a++PvPp+Ll +i+ XP_021283431.1 136 PFTNAQWQELERQAMIFKYMKASVPVPPDLLIPIT 170 8********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MMNMACYSVS DKAAKESSRI EAVDLGVKLQ SSKLLLPGKM MTVHHDNRHR PXPPYAICYG 60 DVDGDGPTGN NNRPKTRNIY DVFPSSDSGA AAVAAIASGG AVXVRTLQLL TLPSTTPLCS 120 HAYKSPGGMA ASLEFPFTNA QWQELERQAM IFKYMKASVP VPPDLLIPIT GSPSVPVASN 180 SALGGGALXS EVLDQGDLEP GRCRRTDGKK WRCSRDVXPD QKYCERHMHR GRPRSRKPVE 240 LPNKKTRHTH TQALPSSSST ITKDXSPSQF LGTLAQPFRQ NQTTCFLISQ VXKAATFGPS 300 SVSSYKRPRN SDWIVSEELS PXGAIXQRWH YLMQIVXTSA RSFSNADNSS VLXQNYSKEP 360 LNLNSYANFN ATEDQQSNRC PLFLNSEXIS AREVPEIAAR GFIDAWSTGX SDNRNANSGT 420 ATSVSSNGKL SLSSLSLSME SLTXGMKVGP IRMGLGVTES DQNHQYAXKS HLSSWLGPAS 480 WATSTPGGPL AEVLRPRKIA SAVATTEGGS NPPSPVTGNG NSCSPPVTAV SSPSGVLQRT 540 LASFSDSSGS SSPTLASSGA KPEIGSTWLK GN

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MMNMACYSVS DKAAKESSRI EAVDLGVKLQ SSKLLLPGKM MTVHHDNRHR PXPPYAICYG  60
DVDGDGPTGN NNRPKTRNIY DVFPSSDSGA AAVAAIASGG AVXVRTLQLL TLPSTTPLCS  120
HAYKSPGGMA ASLEFPFTNA QWQELERQAM IFKYMKASVP VPPDLLIPIT GSPSVPVASN  180
SALGGGALXS EVLDQGDLEP GRCRRTDGKK WRCSRDVXPD QKYCERHMHR GRPRSRKPVE  240
LPNKKTRHTH TQALPSSSST ITKDXSPSQF LGTLAQPFRQ NQTTCFLISQ VXKAATFGPS  300
SVSSYKRPRN SDWIVSEELS PXGAIXQRWH YLMQIVXTSA RSFSNADNSS VLXQNYSKEP  360
LNLNSYANFN ATEDQQSNRC PLFLNSEXIS AREVPEIAAR GFIDAWSTGX SDNRNANSGT  420
ATSVSSNGKL SLSSLSLSME SLTXGMKVGP IRMGLGVTES DQNHQYAXKS HLSSWLGPAS  480
WATSTPGGPL AEVLRPRKIA SAVATTEGGS NPPSPVTGNG NSCSPPVTAV SSPSGVLQRT  540
LASFSDSSGS SSPTLASSGA KPEIGSTWLK GN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-36	GRF family protein