PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283336.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 292aa MW: 30528.8 Da PI: 9.8707

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	34	57	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_021283336.1 34 KSKPCTKFFSTAGCPFGESCHFLH 57 7789******************** PP
2	zf-CCCH	27.1	7.3e-09	97	121	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC+ f+ Ck+Gd+C+FaHg XP_021283336.1 97 KTRLCNKFSSAEGCKFGDKCHFAHG 121 8***********************9 PP
3	zf-CCCH	39.4	9.9e-13	259	283	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg XP_021283336.1 259 YKTKLCDNFAK-GSCTFGERCHFAHG 283 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MDTRKRGRSE AGFNGNGGFK KTKPEMESTG VGSKSKPCTK FFSTAGCPFG ESCHFLHYVP 60 GGYNAVAQIM NLAPAVPPAS RNMAAPPPIP NGSSAVKTRL CNKFSSAEGC KFGDKCHFAH 120 GDWELGKPIA PSHDDPRGMA TIAGRMGSRM EPPPPSGPAA SFGASATAKI SVDASLAGAI 180 IGKGGVHSKQ ICRRTGAKLS IREHESDPTL RNIELEGSFE QIKQASAMVR ELISSLGPVP 240 GPAKTHGVPG GPGHPGSNYK TKLCDNFAKG SCTFGERCHF AHGIAELRKS AV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	9e-80	C3H family protein