PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283254.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 967aa MW: 108734 Da PI: 5.0464

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283254.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.7e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_021283254.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_021283254.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACARD ENYEPGXDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREX KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDVADED RPVEQPKFPT 240 TIEELEGKRR VDIEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLL AGNEELAEGS GATRALLANY SQTPRQGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKWENQTPNP MSTPSMTPGG 420 AGLTPRIGMT PSRDGYAFGV TPKGTPIRDE LHINEDMDLN DSAKLEQRRQ PDLRRNLRSG 480 LGTLPQPKNE YQIVIQPPSE ENEEPEEKIE EDMSDRIARE RAEEEARLQA LLKKRSKVLQ 540 RELPRPPSAS LELIRDSLLR TDGDKSSFVP PTSIEQADEM IRKELLSLLE HDNAKYPLDE 600 KANKGKKKAT KRSANGSIPS IEDFEEDEMK EADSLIKEEA EFLRVAMGHE NEYLDDFVEA 660 HNTCLNDLMY FPTRNAYGLS SVAGNMEKLA ALQTEFDNVK KKLDNDKSKA ESMEKKFSVL 720 TQGYERRAAT LWRQIESTFK QMDTAGTELE CFQALQKQEQ LAASHRINGL WEEVQKQKEL 780 EQTLQRRYGN LAAELERIQI LMNVYRVQAQ KQEEAAGKDH AFELSEAAVA ANPAVVPSTG 840 LSEPVPSSEH VDLSLDEQSS LKAVMNVDSG KEHATIDVET DGSMSVNVPL VVEDKEDNIS 900 KTLDGMTGDI VTSSEVAAES INPDAVSTKQ DSIQETLEGE GVADHTKVDN SSVLGGDTAE 960 KQTGMEE

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACARD ENYEPGXDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREX KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDVADED RPVEQPKFPT  240
TIEELEGKRR VDIEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLL AGNEELAEGS GATRALLANY SQTPRQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKWENQTPNP MSTPSMTPGG  420
AGLTPRIGMT PSRDGYAFGV TPKGTPIRDE LHINEDMDLN DSAKLEQRRQ PDLRRNLRSG  480
LGTLPQPKNE YQIVIQPPSE ENEEPEEKIE EDMSDRIARE RAEEEARLQA LLKKRSKVLQ  540
RELPRPPSAS LELIRDSLLR TDGDKSSFVP PTSIEQADEM IRKELLSLLE HDNAKYPLDE  600
KANKGKKKAT KRSANGSIPS IEDFEEDEMK EADSLIKEEA EFLRVAMGHE NEYLDDFVEA  660
HNTCLNDLMY FPTRNAYGLS SVAGNMEKLA ALQTEFDNVK KKLDNDKSKA ESMEKKFSVL  720
TQGYERRAAT LWRQIESTFK QMDTAGTELE CFQALQKQEQ LAASHRINGL WEEVQKQKEL  780
EQTLQRRYGN LAAELERIQI LMNVYRVQAQ KQEEAAGKDH AFELSEAAVA ANPAVVPSTG  840
LSEPVPSSEH VDLSLDEQSS LKAVMNVDSG KEHATIDVET DGSMSVNVPL VVEDKEDNIS  900
KTLDGMTGDI VTSSEVAAES INPDAVSTKQ DSIQETLEGE GVADHTKVDN SSVLGGDTAE  960
KQTGMEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRREXKAAGIDTRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein