PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283244.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

RAV

Protein Properties

Length: 386aa MW: 43937.3 Da PI: 6.5229

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.9	3.4e-10	90	137	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV + k +g+W A+++ + +r++lg+f ++ +Aa a++ a+ k++ XP_021283244.1 90 SRFKGVIRQK-NGQWGAQLYA------NhTRIWLGTFKSETDAAMAYDSAAIKFR 137 789*6566.9**887......34******99********9987 PP
2	B3	83.7	1.7e-26	213	308	1	89
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ ++ +l+++d+ r W+++++y+++s+++v+t+GW++F k+++Lk++D + F++ ++ + XP_021283244.1 213 FQKELTPSDVGKLNRLVIPKKYAVKYfppiegGGSRGSDAELIFYDKFMRLWKFRYCYWNSSQSFVFTRGWNRFLKEKELKANDLISFYVCESrK 307 99***************************98888999************************************************764323 PP E CS B3 89 e 89 e XP_021283244.1 308 E 308 3 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGLGWEDTGQ TFGVPMEGYE LQQQLHIFYF STSVLAFXID MFNFLETMDE EMLSVISSGE 60 GNAASEVSDS ISTSHPAKKR QRSASNGTSS RFKGVIRQKN GQWGAQLYAN HTRIWLGTFK 120 SETDAAMAYD SAAIKFRTGD THRNFPLTDI TVEEPKFQSN YSAEAVLGMI RDGSYQYKFM 180 DFLKHSSRNG KVEIDLSSVG TDSEKGLSCK QLFQKELTPS DVGKLNRLVI PKKYAVKYFP 240 PIEGGGSRGS DAELIFYDKF MRLWKFRYCY WNSSQSFVFT RGWNRFLKEK ELKANDLISF 300 YVCESRKEQE VQRFCMIDVN NYGNDNAWAA AANLQVEREV DLRLRLGHCC TFDGGKQLKQ 360 EQELMAVDAT EDVNTTGFKL FGMQIN

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGLGWEDTGQ TFGVPMEGYE LQQQLHIFYF STSVLAFXID MFNFLETMDE EMLSVISSGE  60
GNAASEVSDS ISTSHPAKKR QRSASNGTSS RFKGVIRQKN GQWGAQLYAN HTRIWLGTFK  120
SETDAAMAYD SAAIKFRTGD THRNFPLTDI TVEEPKFQSN YSAEAVLGMI RDGSYQYKFM  180
DFLKHSSRNG KVEIDLSSVG TDSEKGLSCK QLFQKELTPS DVGKLNRLVI PKKYAVKYFP  240
PIEGGGSRGS DAELIFYDKF MRLWKFRYCY WNSSQSFVFT RGWNRFLKEK ELKANDLISF  300
YVCESRKEQE VQRFCMIDVN NYGNDNAWAA AANLQVEREV DLRLRLGHCC TFDGGKQLKQ  360
EQELMAVDAT EDVNTTGFKL FGMQIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-98	RAV family protein