PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021283223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26381.7 Da PI: 9.8344 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.1 | 4.6e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ f kR +g+lKKA+ELS+LC++e++vii+++ XP_021283223.1 11 IINDSARKAAFRKRTKGLLKKASELSTLCGIEACVIIYGP 50 7799**********************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence |
MTRKKVQLAY IINDSARKAA FRKRTKGLLK KASELSTLCG IEACVIIYGP YDAQPEVWPS 60 FAAAQHVLSE FKKMPKMDQS QKMMTQENFL RQRIAKANQQ LKRQCRDNRE KETTQVMFQC 120 LAEQGLENLN MMDLTDLKWL LEQNLKDIDK RIDMLTKASH SQGFATTIAM PEVMLKNGEK 180 VQAKSPDREA SLETVQRQLL IKDLMHPREH VELGSLLPLR DNNPTTFFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-61 | M-type_MADS family protein |