PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021283222.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26751.8 Da PI: 9.7759 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.6 | 7.5e-19 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i +s r+ tf kR++g+lKKA+ELS+LC+++++vii+s+ + XP_021283222.1 11 ITKDSARKATFRKRKKGLLKKASELSTLCGIDASVIIYSPYN 52 778999*********************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MTRSKVKISY ITKDSARKAT FRKRKKGLLK KASELSTLCG IDASVIIYSP YNTQPDVWPS 60 PTEAQRVLSK FKKMPKMDQS VEMMSQESLL KQRIELANKQ LKRQCRDNRE KEITQVMFQC 120 LGGQGLENLN MMDLNDLGWL LEQNMKDIDR RIYMLTKASH SQGSVAAASA SATMATPEAM 180 LKSGEKVHVE SPEREVSPET EQRQQLIKDL MHSPENMRLD SVFSFGDNNP NAFFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-46 | M-type_MADS family protein |