PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021283173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 34817.9 Da PI: 8.236 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.7e-18 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl XP_021283173.1 25 RGPWTPEEDELLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 78 | 123 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_021283173.1 78 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 678889****************.*********.************996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence |
MRSPSLSGAS TTSKTPCCSK VGIKRGPWTP EEDELLANYI KREGEGRWRT LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGR IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLSKKLISQ GIDPRTHKPL NLVSHSSSQV NHDPVPKPNP IPPNFNSSQL GENTIAMTAK 180 TTTQDFTPTN LEYHQQYDQN QQVVASMANW RNPDGATLIV GQPSSLGNGG DYIENCNEDV 240 FSSFLDSLIN DNLFVNQQQE QQQPNNVVAA EASTQNFTHG NIWEAEIMSS MVAFGNEQNP 300 FINHHQHQP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-81 | MYB family protein |