PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021283082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27031.1 Da PI: 10.0562 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.9 | 1.1e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++g+lKK +ELS+LC++e++ ii+s+ XP_021283082.1 11 ITNDSARKATFKKRKKGLLKKVNELSTLCGIEACAIIYSP 50 89*************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MTRKKVKLAY ITNDSARKAT FKKRKKGLLK KVNELSTLCG IEACAIIYSP YDAQPEVWPS 60 PAGAQRVLSE FKKMPEMEQS KKMVSQESFL RQRITKANEQ LKRQCRDNRE KEITQVMFQC 120 LVGKGLQNLN MMDLNDLGWL LEQNLKDIDK RIDTLNKASH SRGSAAASSG TTMATLDARL 180 KSGEKVQPES SDREVSMETA QRQQWIKDLM HPPEHVGLGS VLPFGDNNPT ALWSNAFFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAYITNDSARKATFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-55 | M-type_MADS family protein |