PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283015.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 520aa MW: 58352.7 Da PI: 6.4393

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.9	1.8e-30	365	453	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ +k k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql XP_021283015.1 365 RWPRDEVLALINLRCSLYNNGDHDKegaaIKAPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 453 8************9999999764444499***************************************8.9999******95 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MTLIEDNCGC GGEQLQACLE RERRSAEKCK EKFEEESRYF NSINCSKNYR LFSELEELCQ 60 GENPPPPHHN QQVGGAAEKN KNVEKSREDE DNMGQNLEDN SRNIDEYQTT AGNNAPEDNE 120 KVVENKTDNK NGSNRKRKRQ NKFEMIKGFC EDIVNKLMTQ QEEMHNKLLE DMVKRDEEKV 180 AREEAWKKQE LDRINQELEL RAKEQAIASD RQATIIKFLS KFSSTGSSKC FRRSNEALVK 240 VPNDSNPPTT SSSLVPAQNP NPTVNTQCKV DQVSSSTLST MVLGHQNSGS CPTHNNQIKA 300 TSVTESQAPE NPNPKTLTSS ALALAPKNPN PVNAQSNPSP PTSSLTVNKA PLTPTSNDKE 360 DLGKRWPRDE VLALINLRCS LYNNGDHDKE GAAIKAPLWE RISQGMSELG YKRSAKRCKE 420 KWENINKYFR KTKDVNKKRS LDSRTCPYFH QLSTLYNQGT LIAPSEGLEN SPALPENHSA 480 ALPESGIDNS SQRGPAKDST VHFSEGETNM VQVPAFEFEF

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MTLIEDNCGC GGEQLQACLE RERRSAEKCK EKFEEESRYF NSINCSKNYR LFSELEELCQ  60
GENPPPPHHN QQVGGAAEKN KNVEKSREDE DNMGQNLEDN SRNIDEYQTT AGNNAPEDNE  120
KVVENKTDNK NGSNRKRKRQ NKFEMIKGFC EDIVNKLMTQ QEEMHNKLLE DMVKRDEEKV  180
AREEAWKKQE LDRINQELEL RAKEQAIASD RQATIIKFLS KFSSTGSSKC FRRSNEALVK  240
VPNDSNPPTT SSSLVPAQNP NPTVNTQCKV DQVSSSTLST MVLGHQNSGS CPTHNNQIKA  300
TSVTESQAPE NPNPKTLTSS ALALAPKNPN PVNAQSNPSP PTSSLTVNKA PLTPTSNDKE  360
DLGKRWPRDE VLALINLRCS LYNNGDHDKE GAAIKAPLWE RISQGMSELG YKRSAKRCKE  420
KWENINKYFR KTKDVNKKRS LDSRTCPYFH QLSTLYNQGT LIAPSEGLEN SPALPENHSA  480
ALPESGIDNS SQRGPAKDST VHFSEGETNM VQVPAFEFEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	4e-83	Trihelix family protein