PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283004.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 408aa MW: 46286.9 Da PI: 6.8851

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.3	1.2e-17	45	133	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 k++++s+v +l lp +f++ h+ k + t++ledesg++++ ++i ++ + l++GWk F ++L egD++vF+l+++s+f +v + XP_021283004.1 45 MKTMVRSNVRHGFWLHLPMPFCKLHMPK--HDATVILEDESGEEYKTTYIAER----TALSAGWKAFSAGHKLVEGDVLVFHLVSSSKF--KVYI 131 699*****************999744..6679***********4444....45**********************998888..7777 PP E- CS B3 97 fr 98 +r XP_021283004.1 132 VR 133 66 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MGTKIEEPQI SETSLDPDNV NPQPSVMERV EELQANLAAG FPSCMKTMVR SNVRHGFWLH 60 LPMPFCKLHM PKHDATVILE DESGEEYKTT YIAERTALSA GWKAFSAGHK LVEGDVLVFH 120 LVSSSKFKVY IVRAFKSNKV DGRFGSLDVN VDAKPIRSVR MKRRKRTSKR AKCLELLPLN 180 HAQDNVENNS LMVLDTKNER LVDQSDNDSK DLSAGLFDGI RSLASIIDFN EVKSIDSFVI 240 TVNGSGIDSE LSEYHKIKYY ELCCSQNSFL HDHLLKSISS KLAAEIITQT VNIAEAVKGC 300 KLSTFQADYS LWDKTLKGFE LLGMNVGFLR ARLNRLKTLA LELQEAVESE RHRVSLEQDH 360 MKEEKKSLEM KLVKLKEAMH RLDAEIENLK ANAERHEFIF QEEVNAAW

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MGTKIEEPQI SETSLDPDNV NPQPSVMERV EELQANLAAG FPSCMKTMVR SNVRHGFWLH  60
LPMPFCKLHM PKHDATVILE DESGEEYKTT YIAERTALSA GWKAFSAGHK LVEGDVLVFH  120
LVSSSKFKVY IVRAFKSNKV DGRFGSLDVN VDAKPIRSVR MKRRKRTSKR AKCLELLPLN  180
HAQDNVENNS LMVLDTKNER LVDQSDNDSK DLSAGLFDGI RSLASIIDFN EVKSIDSFVI  240
TVNGSGIDSE LSEYHKIKYY ELCCSQNSFL HDHLLKSISS KLAAEIITQT VNIAEAVKGC  300
KLSTFQADYS LWDKTLKGFE LLGMNVGFLR ARLNRLKTLA LELQEAVESE RHRVSLEQDH  360
MKEEKKSLEM KLVKLKEAMH RLDAEIENLK ANAERHEFIF QEEVNAAW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-35	B3 family protein