PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021282883.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 352aa    MW: 36698.1 Da    PI: 6.0368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021282883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10202246554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  XP_021282883.1 202 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 246
                     99***********************8.....6****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MAGNQQEGLG DDFFEQILAV PPGYGGGAGG GGAGEVGSAT LPMALQLGSS GGPAGGSSGD  60
GGGGGGGFRG MGIGVGMGMM PLGLNLEHGF LRHEDGVVVD SNNSNSNNNN NNNNNNNASC  120
SAASAVSGIS ERDSMHMTSL FPPFGQMQTQ QIRPSAPPPQ PPHQLHQQFH SQPTSGPVAA  180
APHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPSCNKT DRAAMLDEIV  240
DYVKFLRLQV KVLSMSRLGA AGAVAQLVAD VPLSSVEGDG IEGGTQPAWE KWSNDGTEQQ  300
VAKLMEEDIG AAMQFLQSKA LCIMPISLAS AIFRTHQPDA PTIVKPESST PS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-60bHLH family protein