PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282855.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GeBP

Protein Properties

Length: 430aa MW: 47068.1 Da PI: 4.4493

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.4	5.8e-35	131	233	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 lfqrlw++eDei lLqG++d+ +++ + + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk++sf+++hdq +f XP_021282855.1 131 LFQRLWTDEDEIELLQGFLDYSSSKTSnsssshhHHHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKISSGKDFSFKSPHDQATF 225 79*****************877766455444334569999************************************************* PP DUF573 90 elskkiWg 97 e+s+kiW XP_021282855.1 226 EISRKIWS 233 *****6 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MASEQYDAVF EESQDDDEEP SSSDNDLDEN DDVLNGNDDV LNDEEDEELL EEEEDINXPS 60 LLPQPSAAAA SAVSSAAIPA VPLAVPSATA XTIAAVPNDE SPPESKRQRI ESAVTEKKPP 120 PPSQFDESRR LFQRLWTDED EIELLQGFLD YSSSKTSNSS SSHHHHHHDT ALFYDQIKSK 180 LQLDFNKNQL VEKLRRLKKK YRNVMNKISS GKDFSFKSPH DQATFEISRK IWSNCVGKVE 240 DNVLDDDENN NNNVNLIDES GEKKNFTPKS AASKKRSRSK GGKMEEKRVL NDGFVIANNN 300 NNNFNNRSTN DNGIVEGFGG GGGGGGNVAG VIEETVRSCL TPLFKELLGS VIGGGGGGCG 360 GRGISGLAMN AMPLNFGGSM NFGGGGGNGE WMDERWRKQQ ILELEVYSKR LELVQDQIKA 420 ALEELRSMGG

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MASEQYDAVF EESQDDDEEP SSSDNDLDEN DDVLNGNDDV LNDEEDEELL EEEEDINXPS  60
LLPQPSAAAA SAVSSAAIPA VPLAVPSATA XTIAAVPNDE SPPESKRQRI ESAVTEKKPP  120
PPSQFDESRR LFQRLWTDED EIELLQGFLD YSSSKTSNSS SSHHHHHHDT ALFYDQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVMNKISS GKDFSFKSPH DQATFEISRK IWSNCVGKVE  240
DNVLDDDENN NNNVNLIDES GEKKNFTPKS AASKKRSRSK GGKMEEKRVL NDGFVIANNN  300
NNNFNNRSTN DNGIVEGFGG GGGGGGNVAG VIEETVRSCL TPLFKELLGS VIGGGGGGCG  360
GRGISGLAMN AMPLNFGGSM NFGGGGGNGE WMDERWRKQQ ILELEVYSKR LELVQDQIKA  420
ALEELRSMGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	1e-49	GeBP family protein