PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282746.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 423aa MW: 47346.5 Da PI: 6.9361

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	248	302	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_021282746.1 248 KTRIRWTQDLHDKFVECVKRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRI 302 68****************************************************7 PP
2	Myb_DNA-binding	48.5	2.1e-15	252	301	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 rWT+++++++v++vk+lGg t+k+I + m +g+t ++ks++qky+ XP_021282746.1 252 RWTQDLHDKFVECVKRLGGAekaTPKAILKLMDtEGLTIFHVKSHLQKYR 301 9***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MNTQKIDCQE HLEQNLGFSR VCNFEYVNHD GFQQPWNMGI RIQAPATEGG LQQENPGAAK 60 TSNTIMSGFL SPASAFYATE RCMGFSEYGS QGDRSSYTSQ YNKSCNSQLP SFHASGDNFS 120 IESVAQDETN YELRNTFESL VKSQIYCNQY QKSSEKSYKI PCSNSQGSQV SPHDQTNFLG 180 NNAVTVGSHY SVPFRVNQDQ RAYCNSYRSP LAQVSIFQQG KQSSNCSSGT FSVSSGNSVS 240 TGAALASKTR IRWTQDLHDK FVECVKRLGG AEKATPKAIL KLMDTEGLTI FHVKSHLQKY 300 RIAKYMPDSA EGKSDKRSST NDVTQLDVKT GLHLTEALQL QLDVQRRLHE QLEIQRNLQL 360 RIEEQGRQLK MMIDQQQKTN ESLLKKQDLD ITPFDHDPSF SLEDVEVSIA ESSGNAHFPS 420 KIS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MNTQKIDCQE HLEQNLGFSR VCNFEYVNHD GFQQPWNMGI RIQAPATEGG LQQENPGAAK  60
TSNTIMSGFL SPASAFYATE RCMGFSEYGS QGDRSSYTSQ YNKSCNSQLP SFHASGDNFS  120
IESVAQDETN YELRNTFESL VKSQIYCNQY QKSSEKSYKI PCSNSQGSQV SPHDQTNFLG  180
NNAVTVGSHY SVPFRVNQDQ RAYCNSYRSP LAQVSIFQQG KQSSNCSSGT FSVSSGNSVS  240
TGAALASKTR IRWTQDLHDK FVECVKRLGG AEKATPKAIL KLMDTEGLTI FHVKSHLQKY  300
RIAKYMPDSA EGKSDKRSST NDVTQLDVKT GLHLTEALQL QLDVQRRLHE QLEIQRNLQL  360
RIEEQGRQLK MMIDQQQKTN ESLLKKQDLD ITPFDHDPSF SLEDVEVSIA ESSGNAHFPS  420
KIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	9e-78	G2-like family protein