PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282664.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 704aa MW: 78483.2 Da PI: 5.3115

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	645	699	1	47
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 +++WT++E+e l + v+++ ++ Wk+I + gRt ++k++w++ XP_021282664.1 645 KLPWTKDEEEMLSREVEKYASHggtvPWKKILDMGTsvflSGRTTVDLKDKWRNM 699 689*************9999999**9765599999**********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MIALRCLEEL FGPNNGLRDV APPDSRVVFD LSASCEDVLK HIVQEVSLSN LRKAGPELLR 60 WDVHPFSMHK RASLPKCALE QLKDSILEET PVLDGDENTP TWRLDDSDDE NGNREDNLIP 120 QTHEHDNEVL QDGLLERNLI PIKRCKSDLV AGNLVGLVSC NQDGMHNDFP VNAKKCKQDA 180 TCTIQSVEKI PIPLHGDEQL DESGKIIKVT EIEGHNLRKD SQAGEGDQDV LVVSRTVGQS 240 DAVGHVELQD NQMENAQNAD KMGEQKYGYR PSQNVVMDES NHVENGVLEK SPGGDASENF 300 DQGFPLYSLN STSADGLQQN IEPDEAKADM EHPCAEQMCE YVDERFNIAL NKSLFLSSQC 360 MASQDPLGKS GWTEQNFCVK CNKNGHMLVC SSSGCPLVVH ESCLGSPARF DDKGNFYCPF 420 CACSVSIMKY LEAKDKTSLA RKELDAFLEH CSKNLTEQQW KLKSHLSLNV DEDPVGIQMN 480 GNLGERKHKF ISQKREVKCG PSASCLHGNK LCVEEKFMHG AVSVQGAKNE EQEKLVHGQR 540 SMREHEHQQD QLPDNCKCSN DNPAGENTKT ILANQVEVGG KIVKEAVQPQ ITNPPQKPVC 600 ASNSDGEESS TAANDKFIIS SYSTRLRKRE TKCTFPPIPQ LRRKKLPWTK DEEEMLSREV 660 EKYASHGGTV PWKKILDMGT SVFLSGRTTV DLKDKWRNMC KGRL

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MIALRCLEEL FGPNNGLRDV APPDSRVVFD LSASCEDVLK HIVQEVSLSN LRKAGPELLR  60
WDVHPFSMHK RASLPKCALE QLKDSILEET PVLDGDENTP TWRLDDSDDE NGNREDNLIP  120
QTHEHDNEVL QDGLLERNLI PIKRCKSDLV AGNLVGLVSC NQDGMHNDFP VNAKKCKQDA  180
TCTIQSVEKI PIPLHGDEQL DESGKIIKVT EIEGHNLRKD SQAGEGDQDV LVVSRTVGQS  240
DAVGHVELQD NQMENAQNAD KMGEQKYGYR PSQNVVMDES NHVENGVLEK SPGGDASENF  300
DQGFPLYSLN STSADGLQQN IEPDEAKADM EHPCAEQMCE YVDERFNIAL NKSLFLSSQC  360
MASQDPLGKS GWTEQNFCVK CNKNGHMLVC SSSGCPLVVH ESCLGSPARF DDKGNFYCPF  420
CACSVSIMKY LEAKDKTSLA RKELDAFLEH CSKNLTEQQW KLKSHLSLNV DEDPVGIQMN  480
GNLGERKHKF ISQKREVKCG PSASCLHGNK LCVEEKFMHG AVSVQGAKNE EQEKLVHGQR  540
SMREHEHQQD QLPDNCKCSN DNPAGENTKT ILANQVEVGG KIVKEAVQPQ ITNPPQKPVC  600
ASNSDGEESS TAANDKFIIS SYSTRLRKRE TKCTFPPIPQ LRRKKLPWTK DEEEMLSREV  660
EKYASHGGTV PWKKILDMGT SVFLSGRTTV DLKDKWRNMC KGRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	627	645	RKRETKCTFPPIPQLRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	5e-07	MYB_related family protein