PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282663.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 761aa MW: 84854.6 Da PI: 5.1596

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.5e-07	702	756	1	47
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 +++WT++E+e l + v+++ ++ Wk+I + gRt ++k++w++ XP_021282663.1 702 KLPWTKDEEEMLSREVEKYASHggtvPWKKILDMGTsvflSGRTTVDLKDKWRNM 756 689*************9999999**9765599999**********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MDEIGRMLGM SSSGPSLPWL WIIEYLSSFR QIDISIIRGL IEAAPVLPDD LGKNTREMIA 60 LRCLEELFGP NNGLRDVAPP DSRVVFDLSA SCEDVLKHIV QEVSLSNLRK AGPELLRWDV 120 HPFSMHKRAS LPKCALEQLK DSILEETPVL DGDENTPTWR LDDSDDENGN REDNLIPQTH 180 EHDNEVLQDG LLERNLIPIK RCKSDLVAGN LVGLVSCNQD GMHNDFPVNA KKCKQDATCT 240 IQSVEKIPIP LHGDEQLDES GKIIKVTEIE GHNLRKDSQA GEGDQDVLVV SRTVGQSDAV 300 GHVELQDNQM ENAQNADKMG EQKYGYRPSQ NVVMDESNHV ENGVLEKSPG GDASENFDQG 360 FPLYSLNSTS ADGLQQNIEP DEAKADMEHP CAEQMCEYVD ERFNIALNKS LFLSSQCMAS 420 QDPLGKSGWT EQNFCVKCNK NGHMLVCSSS GCPLVVHESC LGSPARFDDK GNFYCPFCAC 480 SVSIMKYLEA KDKTSLARKE LDAFLEHCSK NLTEQQWKLK SHLSLNVDED PVGIQMNGNL 540 GERKHKFISQ KREVKCGPSA SCLHGNKLCV EEKFMHGAVS VQGAKNEEQE KLVHGQRSMR 600 EHEHQQDQLP DNCKCSNDNP AGENTKTILA NQVEVGGKIV KEAVQPQITN PPQKPVCASN 660 SDGEESSTAA NDKFIISSYS TRLRKRETKC TFPPIPQLRR KKLPWTKDEE EMLSREVEKY 720 ASHGGTVPWK KILDMGTSVF LSGRTTVDLK DKWRNMCKGR L

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MDEIGRMLGM SSSGPSLPWL WIIEYLSSFR QIDISIIRGL IEAAPVLPDD LGKNTREMIA  60
LRCLEELFGP NNGLRDVAPP DSRVVFDLSA SCEDVLKHIV QEVSLSNLRK AGPELLRWDV  120
HPFSMHKRAS LPKCALEQLK DSILEETPVL DGDENTPTWR LDDSDDENGN REDNLIPQTH  180
EHDNEVLQDG LLERNLIPIK RCKSDLVAGN LVGLVSCNQD GMHNDFPVNA KKCKQDATCT  240
IQSVEKIPIP LHGDEQLDES GKIIKVTEIE GHNLRKDSQA GEGDQDVLVV SRTVGQSDAV  300
GHVELQDNQM ENAQNADKMG EQKYGYRPSQ NVVMDESNHV ENGVLEKSPG GDASENFDQG  360
FPLYSLNSTS ADGLQQNIEP DEAKADMEHP CAEQMCEYVD ERFNIALNKS LFLSSQCMAS  420
QDPLGKSGWT EQNFCVKCNK NGHMLVCSSS GCPLVVHESC LGSPARFDDK GNFYCPFCAC  480
SVSIMKYLEA KDKTSLARKE LDAFLEHCSK NLTEQQWKLK SHLSLNVDED PVGIQMNGNL  540
GERKHKFISQ KREVKCGPSA SCLHGNKLCV EEKFMHGAVS VQGAKNEEQE KLVHGQRSMR  600
EHEHQQDQLP DNCKCSNDNP AGENTKTILA NQVEVGGKIV KEAVQPQITN PPQKPVCASN  660
SDGEESSTAA NDKFIISSYS TRLRKRETKC TFPPIPQLRR KKLPWTKDEE EMLSREVEKY  720
ASHGGTVPWK KILDMGTSVF LSGRTTVDLK DKWRNMCKGR L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	684	702	RKRETKCTFPPIPQLRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	6e-07	MYB_related family protein