PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282661.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 839aa MW: 93921.4 Da PI: 5.3453

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.9e-07	780	834	1	47
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 +++WT++E+e l + v+++ ++ Wk+I + gRt ++k++w++ XP_021282661.1 780 KLPWTKDEEEMLSREVEKYASHggtvPWKKILDMGTsvflSGRTTVDLKDKWRNM 834 689*************9999999**9765599999**********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence
MLQLFFAMAF SAVPLTLYVP PVRSLNLFVE AVEDMLRQTA LYTLRVYPRI RLGLSRIFQS 60 IFHLSSYIEC WLLNSSILMD EIGRMLGMSS SGPSLPWLWI IEYLSSFRQI DISIIRGLIE 120 AAPVLPDDLG KNTREMIALR CLEELFGPNN GLRDVAPPDS RVVFDLSASC EDVLKHIVQE 180 VSLSNLRKAG PELLRWDVHP FSMHKRASLP KCALEQLKDS ILEETPVLDG DENTPTWRLD 240 DSDDENGNRE DNLIPQTHEH DNEVLQDGLL ERNLIPIKRC KSDLVAGNLV GLVSCNQDGM 300 HNDFPVNAKK CKQDATCTIQ SVEKIPIPLH GDEQLDESGK IIKVTEIEGH NLRKDSQAGE 360 GDQDVLVVSR TVGQSDAVGH VELQDNQMEN AQNADKMGEQ KYGYRPSQNV VMDESNHVEN 420 GVLEKSPGGD ASENFDQGFP LYSLNSTSAD GLQQNIEPDE AKADMEHPCA EQMCEYVDER 480 FNIALNKSLF LSSQCMASQD PLGKSGWTEQ NFCVKCNKNG HMLVCSSSGC PLVVHESCLG 540 SPARFDDKGN FYCPFCACSV SIMKYLEAKD KTSLARKELD AFLEHCSKNL TEQQWKLKSH 600 LSLNVDEDPV GIQMNGNLGE RKHKFISQKR EVKCGPSASC LHGNKLCVEE KFMHGAVSVQ 660 GAKNEEQEKL VHGQRSMREH EHQQDQLPDN CKCSNDNPAG ENTKTILANQ VEVGGKIVKE 720 AVQPQITNPP QKPVCASNSD GEESSTAAND KFIISSYSTR LRKRETKCTF PPIPQLRRKK 780 LPWTKDEEEM LSREVEKYAS HGGTVPWKKI LDMGTSVFLS GRTTVDLKDK WRNMCKGRL

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence

MLQLFFAMAF SAVPLTLYVP PVRSLNLFVE AVEDMLRQTA LYTLRVYPRI RLGLSRIFQS  60
IFHLSSYIEC WLLNSSILMD EIGRMLGMSS SGPSLPWLWI IEYLSSFRQI DISIIRGLIE  120
AAPVLPDDLG KNTREMIALR CLEELFGPNN GLRDVAPPDS RVVFDLSASC EDVLKHIVQE  180
VSLSNLRKAG PELLRWDVHP FSMHKRASLP KCALEQLKDS ILEETPVLDG DENTPTWRLD  240
DSDDENGNRE DNLIPQTHEH DNEVLQDGLL ERNLIPIKRC KSDLVAGNLV GLVSCNQDGM  300
HNDFPVNAKK CKQDATCTIQ SVEKIPIPLH GDEQLDESGK IIKVTEIEGH NLRKDSQAGE  360
GDQDVLVVSR TVGQSDAVGH VELQDNQMEN AQNADKMGEQ KYGYRPSQNV VMDESNHVEN  420
GVLEKSPGGD ASENFDQGFP LYSLNSTSAD GLQQNIEPDE AKADMEHPCA EQMCEYVDER  480
FNIALNKSLF LSSQCMASQD PLGKSGWTEQ NFCVKCNKNG HMLVCSSSGC PLVVHESCLG  540
SPARFDDKGN FYCPFCACSV SIMKYLEAKD KTSLARKELD AFLEHCSKNL TEQQWKLKSH  600
LSLNVDEDPV GIQMNGNLGE RKHKFISQKR EVKCGPSASC LHGNKLCVEE KFMHGAVSVQ  660
GAKNEEQEKL VHGQRSMREH EHQQDQLPDN CKCSNDNPAG ENTKTILANQ VEVGGKIVKE  720
AVQPQITNPP QKPVCASNSD GEESSTAAND KFIISSYSTR LRKRETKCTF PPIPQLRRKK  780
LPWTKDEEEM LSREVEKYAS HGGTVPWKKI LDMGTSVFLS GRTTVDLKDK WRNMCKGRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	762	780	RKRETKCTFPPIPQLRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	4e-07	MYB_related family protein