PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021282524.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 303aa    MW: 33396.7 Da    PI: 8.5578
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021282524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.9e-17230264135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  XP_021282524.1 230 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 264
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDFCQNVSVS GEYQQDQVLS SPCSKLGATL ATTGTLDDLF PAQNTEVDKS LEWLSIFVED  60
CLSSTGNCIP VAATTNVQNV STTTATKPAK SLQQKPQQII PPSLQKFVVP GKARSKRKRV  120
AATTLSKTKM NPFTGWSYQL NSHNQNFQLA SSDPPLLQQA YWLADSELIV PKKEDDSNNS  180
SSSMMGNSEV EESKKEEMEG EKMVVVTKES SGSLEGNSGQ QQQQQQPRRC THCLAQRTPQ  240
WRAGPLGPKT LCNACGVRYK SGRLLPEYRP AKSPTFVSYL HSNSHKKVME MRMALLSSIP  300
SEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-39GATA family protein