PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282309.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 342aa MW: 38345.6 Da PI: 7.47

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl XP_021282309.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.7	1.5e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_021282309.1 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ 120 SALEPNMAQD STATSPQFVS KSLNERRSID FGTPAASTTL RLNQTSSSSS TYASSTENIS 180 RLLEGWMRSS PKTNSSNSTT LLKEKWSHHQ NNSSFDNNDS IGSTSAAATT SLQGGYRRKA 240 EQECGELISH EEFESILSFE NMNNVAWDKS TCDSTSKGTC QDSGNDDDKV NNVTMTPETR 300 KQKADQNNNN NPPLSFLEKW LLDESSGQVE EMNQMMELSS IF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ  120
SALEPNMAQD STATSPQFVS KSLNERRSID FGTPAASTTL RLNQTSSSSS TYASSTENIS  180
RLLEGWMRSS PKTNSSNSTT LLKEKWSHHQ NNSSFDNNDS IGSTSAAATT SLQGGYRRKA  240
EQECGELISH EEFESILSFE NMNNVAWDKS TCDSTSKGTC QDSGNDDDKV NNVTMTPETR  300
KQKADQNNNN NPPLSFLEKW LLDESSGQVE EMNQMMELSS IF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-87	MYB family protein