PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282202.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 359aa MW: 38882.4 Da PI: 5.2148

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.1	1.2e-28	50	144	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s +++ ++l+ XP_021282202.1 50 RWTRQEILVLIQGKRVAENRVRRGRaaglafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWENNIKEETESFWVMRNDLR 144 8********************97778888888********************************************9999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MALEQLSLAA TPDPVDGQTD AVNAATNGVE SRPASVDGGD DVSKAPRLPR WTRQEILVLI 60 QGKRVAENRV RRGRAAGLAF GSGQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK 120 KIKEWENNIK EETESFWVMR NDLRRERKLP GFFDKEVYDI LDGGATGVPG SATAPGLALA 180 LAPTPVVQDV AEDVEAVFDS GRSAAAEDGL FSDFEQDDAA GSPEKVEPAV AAAAGKAVPA 240 PMPISEKQYQ PQPAVRGNQS QGTTNEKPPN SSSNPEIGSA SLEARKRKRM GVDGDEEMSS 300 MQYHLIDVLE KNGKMLVAQL EAQNTNFQQD REQRKDHADN LVAVLNKLAD ALGRIADKL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MALEQLSLAA TPDPVDGQTD AVNAATNGVE SRPASVDGGD DVSKAPRLPR WTRQEILVLI  60
QGKRVAENRV RRGRAAGLAF GSGQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK  120
KIKEWENNIK EETESFWVMR NDLRRERKLP GFFDKEVYDI LDGGATGVPG SATAPGLALA  180
LAPTPVVQDV AEDVEAVFDS GRSAAAEDGL FSDFEQDDAA GSPEKVEPAV AAAAGKAVPA  240
PMPISEKQYQ PQPAVRGNQS QGTTNEKPPN SSSNPEIGSA SLEARKRKRM GVDGDEEMSS  300
MQYHLIDVLE KNGKMLVAQL EAQNTNFQQD REQRKDHADN LVAVLNKLAD ALGRIADKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-106	Trihelix family protein