PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282020.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 358aa MW: 40060 Da PI: 6.7057

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.1e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl XP_021282020.1 15 KGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56.1	8.5e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l XP_021282020.1 68 RGKFSEEEEQTIINLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MMGRSPGGDD NGLKKGPWTP EEDRILVDYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEEQTII NLHAVLGNKW SAIATHLPGR TDNEIKNFWN THLKKKLLQM 120 GIDPVTHRPR TDLNILANLP QLLAAANFSS LMNIPLDNAL RLQSDAAQLA KIQLLHNILQ 180 VLGTSSSTTT PTMEAMNLLA GPSFRENQLY ELLRMNSQLE ENRNLPFAFA PHELTQLQSN 240 FLNLEASQHQ PHQFSEYHQP MKDSKICSNN NDPFASSSSS PVIPTATPQL PALVPASPGH 300 PTTHVNQTEN KINPNDISNP SSTSTTFEAW GDLMDDEASD SYWRDIIDQA SSQSWTMS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MMGRSPGGDD NGLKKGPWTP EEDRILVDYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQTII NLHAVLGNKW SAIATHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDLNILANLP QLLAAANFSS LMNIPLDNAL RLQSDAAQLA KIQLLHNILQ  180
VLGTSSSTTT PTMEAMNLLA GPSFRENQLY ELLRMNSQLE ENRNLPFAFA PHELTQLQSN  240
FLNLEASQHQ PHQFSEYHQP MKDSKICSNN NDPFASSSSS PVIPTATPQL PALVPASPGH  300
PTTHVNQTEN KINPNDISNP SSTSTTFEAW GDLMDDEASD SYWRDIIDQA SSQSWTMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-108	MYB family protein