PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021281961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27385.9 Da PI: 10.537 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37 | 4.5e-12 | 18 | 57 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i +s r+ tf kR++g+ KK +EL +L ++e +vii+s+ XP_021281961.1 18 ITKDSARKATFRKRKKGLSKKTSELNTLYGIETSVIIYSP 57 778999*********************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MESLHAATTR KKLKLSYITK DSARKATFRK RKKGLSKKTS ELNTLYGIET SVIIYSPYDA 60 QPKVWPSPAG AQHVLSKFKK MHKMDQSMGM MSQESFIKQR IKLANKRLKR QCKDNRKKET 120 TQVIFQCLVR QGLENLNMMD LNDLGWLLKQ NMKFIDRRIY MLTKASHSQG SVATASATMA 180 TPEAMLKTGE KVHVESLEHE VSPKTEQRQQ LIKDLMHSPE DIGLDSVLSF GDNNPIAFLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 32 | RKKLKLSYITKDSARKATFRKRK |
2 | 29 | 33 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-40 | M-type_MADS family protein |