PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281898.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 729aa MW: 79263.3 Da PI: 6.2311

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35	3.5e-11	302	358	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g XP_021281898.1 302 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 358 57*****************4444.2455535555.779999************98 PP
2	AP2	46.6	8.4e-15	401	452	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_021281898.1 401 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 452 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MASMNNWLAF SLSPQELPSQ PVDQDHHSQT AVSRLGFNSN DISGADVSGE CFDLTSDSSA 60 PSLNLPPPFG ILEAFNRNNQ SQDWNMKGLG MNSDGNYKTS SELSMLMGSS CNGQSLDQSN 120 QEPKLENFLG NHSFSNHQQN KLHGCNTMYN TTTGEYMFPN CSLQLPSEDT TNARTSNGGV 180 DNDSNNNTNN NNNTNINSGN GSSSIGLSMI KTWLRNQPAP PQPEAKNNGG ASQSLSLSMS 240 TGSQTGSPLP LLTSSTGGGS GGESSSSDNN KQQKTQTGMD SESGAIEAMP RKSIDTFGQR 300 TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEEKAARAYD LAALKYWGTT 360 TTTNFPISNY EKELEEMKHM TRQEYVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG 420 RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPIGGA 480 AKRLKDVEQA EMALDVQRAD DDNMSSQLTD GINNYGAAHH GWPTIAFQQA QPFSMHYPYG 540 QRVWCKQEQD SDTNHTFQDL HQLQLGSTHN FFQPSVLHNL MAMDSSSMEH SSGSNSVIYC 600 NGGGGDAAGS NGASGSYQGV GYGGNGGYMI PMGTVVASDS NQNQGNGFGD NEVKTLGYEN 660 MYGSADPYHS RNLYYLSQQS STGGVKASSY DQASACNNWV PTAVPTIAQR SSNMAVCHGA 720 QTFTVWNDA

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MASMNNWLAF SLSPQELPSQ PVDQDHHSQT AVSRLGFNSN DISGADVSGE CFDLTSDSSA  60
PSLNLPPPFG ILEAFNRNNQ SQDWNMKGLG MNSDGNYKTS SELSMLMGSS CNGQSLDQSN  120
QEPKLENFLG NHSFSNHQQN KLHGCNTMYN TTTGEYMFPN CSLQLPSEDT TNARTSNGGV  180
DNDSNNNTNN NNNTNINSGN GSSSIGLSMI KTWLRNQPAP PQPEAKNNGG ASQSLSLSMS  240
TGSQTGSPLP LLTSSTGGGS GGESSSSDNN KQQKTQTGMD SESGAIEAMP RKSIDTFGQR  300
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEEKAARAYD LAALKYWGTT  360
TTTNFPISNY EKELEEMKHM TRQEYVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG  420
RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPIGGA  480
AKRLKDVEQA EMALDVQRAD DDNMSSQLTD GINNYGAAHH GWPTIAFQQA QPFSMHYPYG  540
QRVWCKQEQD SDTNHTFQDL HQLQLGSTHN FFQPSVLHNL MAMDSSSMEH SSGSNSVIYC  600
NGGGGDAAGS NGASGSYQGV GYGGNGGYMI PMGTVVASDS NQNQGNGFGD NEVKTLGYEN  660
MYGSADPYHS RNLYYLSQQS STGGVKASSY DQASACNNWV PTAVPTIAQR SSNMAVCHGA  720
QTFTVWNDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-126	AP2 family protein