PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281882.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 524aa MW: 58380.7 Da PI: 4.9935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	325	371	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f L++l+P+ K +K++iL ++eY+++L+ XP_021281882.1 325 NHVLSERRRREKLNERFMILKSLVPSV-----SKADKVSILDDTIEYLQDLE 371 79999*******************6.....4**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MSFVFNIGQG LPGRTLASGQ PIWICNAHYA ESKVFSRSLL AKSASIQTVV CFPFSGGVIE 60 LGVTDLVLED LSLIQRIKAL FLDTPHPIGS YKSNPVAGST GNDKDRACPA LDPQIPDTKL 120 SPLLGCEQLE IASPDDSSDG FEPNQPAEDS FVVEGINGGA SQVQSWQFME EEFSNCVHHS 180 LNSSDCISQT FVDHRNFVPL CKGENDNDNG LQDVQECNQT KLTSLDIRSD DLHYQTVLSA 240 LLKSSHQLIL GPHFRNSNQE SSFMRWKKNG LVQSQKAGDE TAQKFLKKIL FEVPQMHDKG 300 LLESPEDNGI RDAAWRPEAD EICGNHVLSE RRRREKLNER FMILKSLVPS VSKADKVSIL 360 DDTIEYLQDL ERRVEELESC RELTDLEART KRKPQDHVER TSDNYGNSKM TYGKKPSLNK 420 RKACDIDEAE LEIDYVASKD GSTDNITVSM SNKDFLIEFR CPWREGILLE IMDALSILNL 480 DCHSVQSSTT EGILSLTIES KYKGSTAASA GTIKQALQRV ARKC

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MSFVFNIGQG LPGRTLASGQ PIWICNAHYA ESKVFSRSLL AKSASIQTVV CFPFSGGVIE  60
LGVTDLVLED LSLIQRIKAL FLDTPHPIGS YKSNPVAGST GNDKDRACPA LDPQIPDTKL  120
SPLLGCEQLE IASPDDSSDG FEPNQPAEDS FVVEGINGGA SQVQSWQFME EEFSNCVHHS  180
LNSSDCISQT FVDHRNFVPL CKGENDNDNG LQDVQECNQT KLTSLDIRSD DLHYQTVLSA  240
LLKSSHQLIL GPHFRNSNQE SSFMRWKKNG LVQSQKAGDE TAQKFLKKIL FEVPQMHDKG  300
LLESPEDNGI RDAAWRPEAD EICGNHVLSE RRRREKLNER FMILKSLVPS VSKADKVSIL  360
DDTIEYLQDL ERRVEELESC RELTDLEART KRKPQDHVER TSDNYGNSKM TYGKKPSLNK  420
RKACDIDEAE LEIDYVASKD GSTDNITVSM SNKDFLIEFR CPWREGILLE IMDALSILNL  480
DCHSVQSSTT EGILSLTIES KYKGSTAASA GTIKQALQRV ARKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	335	ERRRRE
2	331	336	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-169	bHLH family protein