PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281873.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 631aa MW: 70388.2 Da PI: 4.9061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.4e-14	432	478	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f L++l+P+ K +K++iL ++eY+++L+ XP_021281873.1 432 NHVLSERRRREKLNERFMILKSLVPSV-----SKADKVSILDDTIEYLQDLE 478 79999*******************6.....4**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MFDVATVPVQ RSSPFLCLRP SFFSLLCTLG SRVLEWGDGY YNGDIKTRKT VQAVELNANQ 60 LGLQRSEQLR ELYESLSAGD SSPQARRPSA ALSPEDLTDT EWYYLVCMSF VFNIGQGLPG 120 RTLASGQPIW ICNAHYAESK VFSRSLLAKS ASIQTVVCFP FSGGVIELGV TDLVLEDLSL 180 IQRIKALFLD TPHPIGSYKS NPVAGSTGND KDRACPALDP QIPDTKLSPL LGCEQLEIAS 240 PDDSSDGFEP NQPAEDSFVV EGINGGASQV QSWQFMEEEF SNCVHHSLNS SDCISQTFVD 300 HRNFVPLCKG ENDNDNGLQD VQECNQTKLT SLDIRSDDLH YQTVLSALLK SSHQLILGPH 360 FRNSNQESSF MRWKKNGLVQ SQKAGDETAQ KFLKKILFEV PQMHDKGLLE SPEDNGIRDA 420 AWRPEADEIC GNHVLSERRR REKLNERFMI LKSLVPSVSK ADKVSILDDT IEYLQDLERR 480 VEELESCREL TDLEARTKRK PQDHVERTSD NYGNSKMTYG KKPSLNKRKA CDIDEAELEI 540 DYVASKDGST DNITVSMSNK DFLIEFRCPW REGILLEIMD ALSILNLDCH SVQSSTTEGI 600 LSLTIESKYK GSTAASAGTI KQALQRVARK C

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MFDVATVPVQ RSSPFLCLRP SFFSLLCTLG SRVLEWGDGY YNGDIKTRKT VQAVELNANQ  60
LGLQRSEQLR ELYESLSAGD SSPQARRPSA ALSPEDLTDT EWYYLVCMSF VFNIGQGLPG  120
RTLASGQPIW ICNAHYAESK VFSRSLLAKS ASIQTVVCFP FSGGVIELGV TDLVLEDLSL  180
IQRIKALFLD TPHPIGSYKS NPVAGSTGND KDRACPALDP QIPDTKLSPL LGCEQLEIAS  240
PDDSSDGFEP NQPAEDSFVV EGINGGASQV QSWQFMEEEF SNCVHHSLNS SDCISQTFVD  300
HRNFVPLCKG ENDNDNGLQD VQECNQTKLT SLDIRSDDLH YQTVLSALLK SSHQLILGPH  360
FRNSNQESSF MRWKKNGLVQ SQKAGDETAQ KFLKKILFEV PQMHDKGLLE SPEDNGIRDA  420
AWRPEADEIC GNHVLSERRR REKLNERFMI LKSLVPSVSK ADKVSILDDT IEYLQDLERR  480
VEELESCREL TDLEARTKRK PQDHVERTSD NYGNSKMTYG KKPSLNKRKA CDIDEAELEI  540
DYVASKDGST DNITVSMSNK DFLIEFRCPW REGILLEIMD ALSILNLDCH SVQSSTTEGI  600
LSLTIESKYK GSTAASAGTI KQALQRVARK C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	437	442	ERRRRE
2	438	443	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein