PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281869.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 641aa MW: 71698.5 Da PI: 4.9205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.5e-14	442	488	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f L++l+P+ K +K++iL ++eY+++L+ XP_021281869.1 442 NHVLSERRRREKLNERFMILKSLVPSV-----SKADKVSILDDTIEYLQDLE 488 79999*******************6.....4**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MATEVQNQER LPENLKKQLA LAVRNIQWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT 60 VQAVELNANQ LGLQRSEQLR ELYESLSAGD SSPQARRPSA ALSPEDLTDT EWYYLVCMSF 120 VFNIGQGLPG RTLASGQPIW ICNAHYAESK VFSRSLLAKS ASIQTVVCFP FSGGVIELGV 180 TDLVLEDLSL IQRIKALFLD TPHPIGSYKS NPVAGSTGND KDRACPALDP QIPDTKLSPL 240 LGCEQLEIAS PDDSSDGFEP NQPAEDSFVV EGINGGASQV QSWQFMEEEF SNCVHHSLNS 300 SDCISQTFVD HRNFVPLCKG ENDNDNGLQD VQECNQTKLT SLDIRSDDLH YQTVLSALLK 360 SSHQLILGPH FRNSNQESSF MRWKKNGLVQ SQKAGDETAQ KFLKKILFEV PQMHDKGLLE 420 SPEDNGIRDA AWRPEADEIC GNHVLSERRR REKLNERFMI LKSLVPSVSK ADKVSILDDT 480 IEYLQDLERR VEELESCREL TDLEARTKRK PQDHVERTSD NYGNSKMTYG KKPSLNKRKA 540 CDIDEAELEI DYVASKDGST DNITVSMSNK DFLIEFRCPW REGILLEIMD ALSILNLDCH 600 SVQSSTTEGI LSLTIESKYK GSTAASAGTI KQALQRVARK C

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MATEVQNQER LPENLKKQLA LAVRNIQWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT  60
VQAVELNANQ LGLQRSEQLR ELYESLSAGD SSPQARRPSA ALSPEDLTDT EWYYLVCMSF  120
VFNIGQGLPG RTLASGQPIW ICNAHYAESK VFSRSLLAKS ASIQTVVCFP FSGGVIELGV  180
TDLVLEDLSL IQRIKALFLD TPHPIGSYKS NPVAGSTGND KDRACPALDP QIPDTKLSPL  240
LGCEQLEIAS PDDSSDGFEP NQPAEDSFVV EGINGGASQV QSWQFMEEEF SNCVHHSLNS  300
SDCISQTFVD HRNFVPLCKG ENDNDNGLQD VQECNQTKLT SLDIRSDDLH YQTVLSALLK  360
SSHQLILGPH FRNSNQESSF MRWKKNGLVQ SQKAGDETAQ KFLKKILFEV PQMHDKGLLE  420
SPEDNGIRDA AWRPEADEIC GNHVLSERRR REKLNERFMI LKSLVPSVSK ADKVSILDDT  480
IEYLQDLERR VEELESCREL TDLEARTKRK PQDHVERTSD NYGNSKMTYG KKPSLNKRKA  540
CDIDEAELEI DYVASKDGST DNITVSMSNK DFLIEFRCPW REGILLEIMD ALSILNLDCH  600
SVQSSTTEGI LSLTIESKYK GSTAASAGTI KQALQRVARK C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	447	452	ERRRRE
2	448	453	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein