PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281742.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 381aa    MW: 42063.7 Da    PI: 9.2971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.3e-13309354655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  XP_021281742.1 309 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 354
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MDSSTHQSYQ NQNNQPNSGL LRFRSAPSSL LANFTNNLDC GVNKGSFESD RLISRFMNSS  60
GGNSEIEDKS GTEVGVHYAN SQQSYSGLPP HYPRQSSATS SSAMDSSYEL LGMDHHSQGK  120
PIASSLMRQS SSPPGLFTNL SVQNGYASMK GLGNYCGVNG TNGELSSSSN RLKNQISFSS  180
RLPSSLGILS QISEIGNESI RTDGPDDGKL GNSNSDARFY GTGYQYGSWN DSAHLTKNFS  240
GLKRAQDNDR KFFSTNQNDL GNCVHVLSHH LSLPKTSNEM VAMEKFLHFQ DSVPCKIRAK  300
RGCATHPRSI AERVRRTRIS ERMRKLQELV PNMDKQTNTA DMLDLAVEYI KDLQKQFKTL  360
SDNRANCKCL HIQKPVPKQV V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-112bHLH family protein